Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009700 (ansB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009700 showshow history
Names
ansB ansB1 JW2924 ECK2952 b2957
Product
periplasmic L-asparaginase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3099682 3100728 1047 349
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001091
EnteroFam0009700: Trusted threshold=885.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006034 (IPR006034 Asparaginase/glutaminase-like) Apr 2008
Automated Process Approved IPR004550 (IPR004550 L-asparaginase, type II) Apr 2008
Automated Process Approved IPR027474 (IPR027474 L-asparaginase, N-terminal) Jul 2018
Automated Process Approved IPR036152 (IPR036152 Asparaginase/glutaminase-like superfamily) Jul 2018
Automated Process Approved PF00710 (PF00710 Asparaginase, N-terminal) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006528 asparagine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004550
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006034
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004067 asparaginase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004550
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ansB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym ansB1 Published Annotation - GenBank Accession Number: BX950851
Reference: Erwinia carotovora SCRI1043 		Sep 2007
Person Approved synonym ECK2952 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2924 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2957 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic L-asparaginase II Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name periplasmic L-asparaginase II Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009700: Trusted threshold=885.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001091
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR036152 Asparaginase/glutaminase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036152
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027474 L-asparaginase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR027474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006034 Asparaginase/glutaminase-like Protein Sequence Similarity - InterPro Domain: IPR006034
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004550 L-asparaginase, type II Protein Sequence Similarity - InterPro Domain: IPR004550
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00710 Asparaginase, N-terminal Protein Sequence Similarity - PFAM Model Name: PF00710
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.1.1 Published Annotation - Swiss-Prot Accession Number: P00805 Feb 2006
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789327 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P00805 Published Annotation - Swiss-Prot Accession Number: P00805 Jan 2005
Automated Process Approved db xref ASAP:ABE-0009700 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00805 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10046 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947454 Published Annotation - Entrez Gene Database ID: 947454
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Degradation of small molecules: Amino acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0042597 - periplasmic space; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75994.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006528 asparagine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004550
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006034
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004067 asparaginase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004550
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001091 ansB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000141 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000298 ansB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001649 ansB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002455 ansB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001080 ansB CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000279 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000793 ansB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004551 ansB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008122 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001023 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002590 ansB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005878 ansB_1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002981 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008184 ansB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002953 ansB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001319 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006228 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005673 ansB_1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008269 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079704 ansB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003391 ansB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003915 ansA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005713 ansB_1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007276 ansB_1 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003415 ansB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007737 ansB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000217 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007598 ansB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006116 ansB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008373 ansB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005724 ansB_1 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009096 ansB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006070 ansB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006899 ansB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005880 ansB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006392 ansB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005704 ansB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005287 ansB_1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006132 ansB_1 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027976 ansB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006894 ansB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007798 ansB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002763 ansB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003028 ansB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003300 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003431 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003180 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003287 ansB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177543 ansB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003286 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003097 ansB_1 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133876 ansB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001133 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003355 ansB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002273 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007844 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002075 ansB1 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001588 ansB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005647 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140450 ansB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007436 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004764 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003566 ansB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007701 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009621 ansB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009105 ansB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008770 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007704 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006665 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005662 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008583 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006820 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007711 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005359 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002997 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002968 ansB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003886 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007866 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007204 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007351 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005560 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111967 ansB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084737 ansB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003756 ansB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099671 ansB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006149 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006234 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004772 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0004101 CDS
Person Approved Go view Shigella boydii 227 ADV-0003326 ansB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008803 ansB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003849 ansB_1 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003554 ansB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074342 ansB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089203 ansB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003214 ansB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003539 ansB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0002782 ansB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001427 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004660 ansB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001324 ansB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000974 ansB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000628 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237063 ansB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006062 ansB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000832 ansB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005506 ansB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002006 ansB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119934 ansB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006263 ansB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004531 ansB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002113 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008313 ansB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005074 ansB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032526 ansB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005225 ansB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003110 ansB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002767 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005885 ansB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006571 ansB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001483 ansB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001797 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003167 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0016937 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003022 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22084mutantTn5 InsertionRequest the StrainABE-0009700ansBansB::Tn5KAN-I-SceI at position 688 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3094682 to 3105728
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009675yggRCDScomplement30941003095080Downstream
ABE-0009681yggSCDSforward30950983095802Downstream
ABE-0009685yggTCDSforward30958203096386Downstream
ABE-0009690yggUCDSforward30963833096673Downstream
ABE-0009692rdgBCDSforward30966813097274Downstream
ABE-0009694hemWCDSforward30972673098403Downstream
ABE-0285563repeat_regionforward30984133098533Downstream
ABE-0009697yggMCDScomplement30985583099565Downstream
ABE-0009700ansBCDScomplement30996823100728Matches
ABE-0009706yggNCDScomplement31009043101623Upstream
ABE-0285564repeat_regionforward31016963101774Upstream
ABE-0009712yggLCDScomplement31018073102133Upstream
ABE-0009714trmBCDScomplement31021333102852Upstream
ABE-0009720mutYCDSforward31030133104065Upstream
ABE-0009722yggXCDSforward31040933104368Upstream
ABE-0009725mltCCDSforward31044333105512Upstream
ABE-0009728nupGCDSforward31057143106970Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.