Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009725 (mltC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009725 showshow history
Names
mltC yggZ JW5481 ECK2958 b2963
Product
membrane-bound lytic murein transglycosylase C
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3104433 3105512 1080 360
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001096
EnteroFam0009725: Trusted threshold=979.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000189 (IPR000189 Prokaryotic transglycosylase, active site) Apr 2008
Automated Process Approved IPR008258 (IPR008258 Transglycosylase SLT domain 1) Apr 2008
Automated Process Approved IPR024570 (IPR024570 Murein transglycosylase-C, N-terminal) Jul 2018
Automated Process Approved IPR023346 (IPR023346 Lysozyme-like domain superfamily) Jul 2018
Automated Process Approved PF11873 (PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain) Jul 2018
Automated Process Approved PF01464 (PF01464 Transglycosylase SLT domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name mltC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym yggZ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK2958 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5481 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2963 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane-bound lytic murein transglycosylase C Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name lytic murein transglycosylase C, membrane-bound Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name membrane-bound lytic murein transglycosylase C Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009725: Trusted threshold=979.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001096
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000189 Prokaryotic transglycosylase, active site Protein Sequence Similarity - InterPro Domain: IPR000189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023346 Lysozyme-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR008258 Transglycosylase SLT domain 1 Protein Sequence Similarity - InterPro Domain: IPR008258
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01464 Transglycosylase SLT domain Protein Sequence Similarity - PFAM Model Name: PF01464
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024570 Murein transglycosylase-C, N-terminal Protein Sequence Similarity - InterPro Domain: IPR024570
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF11873
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.2.1.- Published Annotation - Swiss-Prot Accession Number: P0C066 Feb 2006
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0C066 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009725 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945428 Published Annotation - Entrez Gene Database ID: 945428
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0C066 Published Annotation - Swiss-Prot Accession Number: P0C066 Jan 2006
Automated Process Approved db xref EcoGene:EG12986 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082191 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76000.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001096 mltC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000894 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000716 mltC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000800 mltC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001333 mltC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000984 mltC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000691 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002740 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000730 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000273 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000787 mltC CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004557 mltC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008234 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019693 mltC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000924 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004721 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305153 mltC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000702 mltC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002948 mltC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002584 mltC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005871 mltC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0002987 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008177 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0002959 mltC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001312 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006220 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005665 mltC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008277 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079712 mltC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003399 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003922 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005706 mltC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007283 mltC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003421 mltC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007745 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000224 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007605 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006123 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008380 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005717 mltC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009103 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006063 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006906 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005887 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006399 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005712 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005294 mltC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006139 mltC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027982 mltC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006887 mltC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007805 mltC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003446 mltC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002769 mltC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003034 mltC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003293 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003424 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003173 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003295 mltC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177549 mltC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003293 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003104 mltC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133882 mltC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001140 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003363 mltC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003110 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001129 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003404 mltC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001600 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007967 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002483 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002751 mltC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002517 mltC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001485 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003332 mltC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000871 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010974 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000130 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291221 mltC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006333 mltC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061211 mltC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000523 mltC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001455 mltC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000625 mltC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005502 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0139399 mltC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007443 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004758 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003573 mltC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007707 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009640 mltC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009124 mltC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008764 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007711 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006672 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005669 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008577 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006826 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007718 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005353 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003003 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002974 mltC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003894 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007872 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007197 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007357 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005566 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111982 mltC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084744 mltC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003764 mltC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099691 mltC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006142 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006225 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004765 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001674 CDS
Person Approved Go view Shigella boydii 227 ADV-0003320 mltC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008810 mltC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003856 mltC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003548 mltC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074349 mltC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089209 mltC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003221 mltC CDS
Person Approved Go view Shigella sonnei 046 ADD-0003533 mltC CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0002107 CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003006 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000498 VC0450 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135559 mltC CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000188 mltC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0005592 mltC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003382 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009966 mltC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001669 mltC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003681 mltC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003792 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242764 mltC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004257 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000388 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006691 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002398 mltC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118404 mltC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006739 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004887 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002065 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006604 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008022 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033110 mltC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007848 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003791 mltC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000663 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006278 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004761 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003334 mltC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004009 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000961 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007284 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002465 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20993mutantTn5 InsertionRequest the StrainABE-0009725mltCmltC::Tn5KAN-I-SceI at position 732 in Minus orientation ,+ pKD460Blattner Laboratory
FB21837mutantTn5 InsertionRequest the StrainABE-0009725mltCmltC::Tn5KAN-I-SceI at position 732 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3099433 to 3110512
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009697yggMCDScomplement30985583099565Upstream
ABE-0009700ansBCDScomplement30996823100728Upstream
ABE-0009706yggNCDScomplement31009043101623Upstream
ABE-0285564repeat_regionforward31016963101774Upstream
ABE-0009712yggLCDScomplement31018073102133Upstream
ABE-0009714trmBCDScomplement31021333102852Upstream
ABE-0009720mutYCDSforward31030133104065Upstream
ABE-0009722yggXCDSforward31040933104368Upstream
ABE-0009725mltCCDSforward31044333105512Matches
ABE-0009728nupGCDSforward31057143106970Downstream
ABE-0009730speCCDScomplement31070203109155Downstream
ABE-0285816yqgHCDScomplement31093173109400Downstream
ABE-0009736yqgACDSforward31095533110260Downstream
ABE-0009738pheVtRNAforward31103663110441Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.