Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009763 (glcA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009763 showshow history
Names
glcA JW2942 ECK2969 yghK b2975
Product
glycolate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3119597 3121279 1683 561
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003804 (IPR003804 L-lactate permease) Apr 2008
Automated Process Approved PF02652 (PF02652 L-lactate permease) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0015727 lactate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003804
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015129 lactate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glcA Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym ECK2969 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2942 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yghK Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b2975 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glycolate transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR003804 L-lactate permease Protein Sequence Similarity - InterPro Domain: IPR003804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02652 L-lactate permease Protein Sequence Similarity - PFAM Model Name: PF02652
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.107 (transport; substrate; L-lactate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.14 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Lactate Permease (LctP) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12995 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009763 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q46839 Published Annotation - Swiss-Prot Accession Number: Q46839 Jan 2006
Automated Process Approved db xref GeneID:947259 Published Annotation - Entrez Gene Database ID: 947259
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789347 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative permease; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76011.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015727 lactate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0005887 integral component of plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003804
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015129 lactate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003804
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002310 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001297 lldP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001814 glcA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005973 glcA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000066 glcA CDS
Ortholog
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003082 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003046 yghK CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001222 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006188 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009635 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079875 glcA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003420 glcA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004028 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003470 glcA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007868 glcA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006798 glcA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007828 glcA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003483 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0002777 glcA CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0003045 yghK CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003622 glcA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003404 glcA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003572 glcA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003419 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177585 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003314 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003250 glcA CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003400 glcA CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0074396 yghK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003230 yghK CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3114597 to 3126279
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0174096yghJCDScomplement31145503119112Downstream
ABE-0285566repeat_regionforward31195613119587Downstream
ABE-0009763glcACDScomplement31195973121279Matches
ABE-0009767glcBCDScomplement31216343123805Upstream
ABE-0009769glcGCDScomplement31238273124231Upstream
ABE-0174097glcFCDScomplement31242363125459Upstream
ABE-0174098glcECDScomplement31254703126522Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.