Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009767 (glcB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009767 showshow history
Names
glcB glc JW2943 ECK2970 b2976
Product
malate synthase G
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3121634 3123805 2172 724
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006253 (IPR006253 Malate synthase G) Apr 2008
Automated Process Approved IPR002114 (IPR002114 Phosphotransferase system, HPr serine phosphorylation site) Apr 2008
Automated Process Approved IPR001465 (IPR001465 Malate synthase) Apr 2008
Automated Process Approved IPR011076 (IPR011076 Malate synthase superfamily) Apr 2008
Automated Process Approved PF01274 (PF01274 Malate synthase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001465
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009436 glyoxylate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006097 glyoxylate cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006253
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011076
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004474 malate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006253
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glcB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2970 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2943 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym glc Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b2976 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product malate synthase G Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name malate synthase G Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR011076 Malate synthase superfamily Protein Sequence Similarity - InterPro Domain: IPR011076
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01274 Malate synthase Protein Sequence Similarity - PFAM Model Name: PF01274
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001465 Malate synthase Protein Sequence Similarity - InterPro Domain: IPR001465
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002114 Phosphotransferase system, HPr serine phosphorylation site Protein Sequence Similarity - InterPro Domain: IPR002114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006253 Malate synthase G Protein Sequence Similarity - InterPro Domain: IPR006253
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.3.3.9 Published Annotation - Swiss-Prot Accession Number: P37330 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.21 (metabolism; central intermediary metabolism; glyoxylate degradation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG20080 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37330 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009767 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948857 Published Annotation - Entrez Gene Database ID: 948857
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37330 Published Annotation - Swiss-Prot Accession Number: P37330 Jan 2005
Automated Process Approved db xref GI:1789348 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Glyoxylate bypass Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009436 - glyoxylate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76012.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001465
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006097 glyoxylate cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006253
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009436 glyoxylate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004474 malate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006253
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011076
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004652 glcB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005554 glcB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0004008 glcB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002548 glcB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005792 glcB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003083 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008151 glcB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003047 glcB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001221 glcB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006187 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010216 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079876 glcB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003422 glcB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004029 glcB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005685 glcB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005508 glcB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003472 glcB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007869 glcB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006796 glcB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007830 glcB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003484 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002778 glcB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003046 glcB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003621 glcB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003403 glcB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003571 glcB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003420 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003315 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003251 glcB CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003401 glcB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074397 glcB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089265 glcB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003231 glcB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3116634 to 3128805
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0174096yghJCDScomplement31145503119112Downstream
ABE-0285566repeat_regionforward31195613119587Downstream
ABE-0009763glcACDScomplement31195973121279Downstream
ABE-0009767glcBCDScomplement31216343123805Matches
ABE-0009769glcGCDScomplement31238273124231Upstream
ABE-0174097glcFCDScomplement31242363125459Upstream
ABE-0174098glcECDScomplement31254703126522Upstream
ABE-0009773glcDCDScomplement31265223128021Upstream
ABE-0009777glcCCDSforward31282723129036Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.