Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009804 (gss) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009804 showshow history
Names
gss JW2956 ECK2982 gsp b2988
Product
glutathionylspermidine synthetase/amidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3136663 3138522 1860 620
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007921 (IPR007921 CHAP domain) Apr 2008
Automated Process Approved IPR005494 (IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain) Apr 2008
Automated Process Approved IPR016185 (IPR016185 Pre-ATP-grasp domain superfamily) Jul 2018
Automated Process Approved IPR038765 (IPR038765 Papain-like cysteine peptidase superfamily) Jul 2018
Automated Process Approved PF03738 (PF03738 Glutathionylspermidine synthase preATP-grasp) Jul 2018
Automated Process Approved PF05257 (PF05257 CHAP domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gss Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Aug 2002
Person Approved synonym JW2956 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym gsp Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2982 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2988 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glutathionylspermidine synthetase/amidase Experimental - PubMed ID: 7775463
Reference: Escherichia coli K-12 W3110 		Mar 2008
Automated Process Approved alternate product name fused glutathionylspermidine amidase/glutathionylspermidine synthetase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name bifunctional: glutathionylspermidine amidase (N-terminal); glutathionylspermidine synthetase (C-terminal) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name glutathionylspermidine synthetase/amidase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR007921 CHAP domain Protein Sequence Similarity - InterPro Domain: IPR007921
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR038765 Papain-like cysteine peptidase superfamily Protein Sequence Similarity - InterPro Domain: IPR038765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF05257 CHAP domain Protein Sequence Similarity - PFAM Model Name: PF05257
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain Protein Sequence Similarity - InterPro Domain: IPR005494
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03738 Glutathionylspermidine synthase preATP-grasp Protein Sequence Similarity - PFAM Model Name: PF03738
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016185 Pre-ATP-grasp domain superfamily Protein Sequence Similarity - InterPro Domain: IPR016185
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 6.3.1.8 Published Annotation - Swiss-Prot Accession Number: P0AES0 Feb 2006
Person Approved EC number 3.5.1.78 Published Annotation - Swiss-Prot Accession Number: P0AES0 Feb 2006
Person Uncurated MultiFun 1.7.14 (metabolism; central intermediary metabolism; polyamine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009804 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789361 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AES0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947474 Published Annotation - Entrez Gene Database ID: 947474
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AES0 Published Annotation - Swiss-Prot Accession Number: P0AES0 Jan 2006
Automated Process Approved db xref EcoGene:EG12882 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Polyamine biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glutathionylspermidine synthetase/amidase; GO_process: GO:0006596 - polyamine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76024.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004855 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002810 gsp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002920 gsp CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002754 gss CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000266 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000756 gsp_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004562 gsp_1 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004694 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002489 gsp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005771 gsp CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003103 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008130 gsp CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003065 gsp CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001200 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006164 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005579 gsp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007850 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079896 gsp CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003442 gsp CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004052 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005665 gsp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005528 gsp CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003492 gsp CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007889 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000258 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007640 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006157 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008416 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005684 gsp CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009136 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006028 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006940 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005921 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006435 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005744 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005327 gsp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006172 gsp CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028015 gsp CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007653 gss CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007850 gsp CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003503 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002789 gss CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003059 gss CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003600 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003382 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003550 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003440 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177610 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003335 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003272 gsp CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133930 gss CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005828 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003419 gsp CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000171 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003425 gss CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007479 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004708 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003602 gsp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007738 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009725 gsp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007366 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007745 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006705 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005703 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006167 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006866 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007750 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005322 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003039 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003006 gsp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003936 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007904 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007167 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007392 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007313 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112039 gsp CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084779 gsp CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003808 gsp CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099779 gsp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006097 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006182 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004733 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003158 gsp CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008829 gsp CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004008 gsp CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003521 gsp CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074417 gsp CDS
Person Approved Go view Shigella flexneri 301 ABT-0089282 gsp CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003242 gsp CDS
Person Approved Go view Shigella sonnei 046 ADD-0003424 gsp CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007190 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002584 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3131663 to 3143522
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009786yghQpseudogenecomplement31313403132408Downstream
ABE-0285163yghQ_1CDSpcomplement31313413132408Downstream
ABE-0009789yghRCDScomplement31324543133212Downstream
ABE-0009793yghSCDScomplement31332443133957Downstream
ABE-0009798yghTCDSforward31341313134823Downstream
ABE-0009800pitBCDScomplement31348723136371Downstream
ABE-0009804gssCDScomplement31366633138522Matches
ABE-0009812yghUCDSforward31387273139593Upstream
ABE-0285568repeat_regionforward31396213139703Upstream
ABE-0009816hybGCDScomplement31397163139964Upstream
ABE-0009818hybFCDScomplement31399773140318Upstream
ABE-0009824hybECDScomplement31403113140799Upstream
ABE-0009826hybDCDScomplement31407923141286Upstream
ABE-0009828hybCCDScomplement31412863142989Upstream
ABE-0009830hybBCDScomplement31429863144164Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.