Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009834 (hybO) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009834 showshow history
Names
hybO yghV JW2965 ECK2991 b2997
Product
hydrogenase 2 small subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3145143 3146261 1119 373
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001821 (IPR001821 [NiFe]-hydrogenase, small subunit) Apr 2008
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Apr 2008
Automated Process Approved IPR013634 (IPR013634 (DEPRECATED) NiFe dehydrogenase small subunit, N-terminal) Apr 2008
Automated Process Approved IPR006137 (IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit) Apr 2008
Automated Process Approved IPR027394 (IPR027394 Cytochrome-c3 hydrogenase, C-terminal) Jul 2018
Automated Process Approved IPR019546 (IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal) Jul 2018
Automated Process Approved PF01058 (PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit) Jul 2018
Automated Process Approved PF14720 (PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006137, IPR001821
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009375 ferredoxin hydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008901 ferredoxin hydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hybO Experimental - PubMed ID: 9738917
Reference: Escherichia coli
Aug 2002
Person Approved synonym JW2965 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2991 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yghV Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved locus tag b2997 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product hydrogenase 2 small subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Person Uncurated alternate product name hydrogenase-2, small chain Experimental - PubMed ID: 9738917
Reference: Escherichia coli
Jan 2006
Person Uncurated alternate product name hydrogenase-2, small subunit Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR001821 [NiFe]-hydrogenase, small subunit Protein Sequence Similarity - InterPro Domain: IPR001821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Protein Sequence Similarity - InterPro Domain: IPR019546
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Protein Sequence Similarity - PFAM Model Name: PF01058
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Protein Sequence Similarity - PFAM Model Name: PF14720
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR027394 Cytochrome-c3 hydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR027394
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Protein Sequence Similarity - InterPro Domain: IPR006137
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR013634 (DEPRECATED) NiFe dehydrogenase small subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013634
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 1.12.99.6 Published Annotation - Swiss-Prot Accession Number: P69741 Feb 2006
Automated Process Uncurated EC number 1.12.7.2 Published Annotation - Database Name: EC2GO: GO:0008901
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P69741 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1789371 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P69741 Published Annotation - Swiss-Prot Accession Number: P69741 Jan 2006
Automated Process Approved db xref GeneID:945902 Published Annotation - Entrez Gene Database ID: 945902
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref ASAP:ABE-0009834 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG13006 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC76033.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 9.76
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006137, IPR001821
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009375 ferredoxin hydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008901 ferredoxin hydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002841 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002800 hybO CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002836 hybO CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008414 hybO CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002675 hybO CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001731 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001303 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000747 hybO CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004572 hybO CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006065 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017346 hybO CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002808 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002498 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005762 hyb0 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003113 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008121 hyb0 CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003073 hybO CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001191 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006153 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005570 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007841 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079905 hybO CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003451 hybO CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004063 hoxS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005656 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005537 hyb0 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003501 hybO CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007901 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000268 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007649 hybO CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006166 hybO CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008425 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005675 hyb0 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009145 hybO CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006019 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006949 hybO CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005930 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006444 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005753 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005336 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006181 hyb0 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028024 hybO CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007644 hybO CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007859 hyb0 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003512 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002798 hybO CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003068 hybO CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003632 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003373 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003541 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003449 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177619 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003344 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003281 hyb0 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133939 hybO CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005838 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003428 hybO CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0003468 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007381 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061471 hybO CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007490 hybO CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004699 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003613 hypO CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007749 hybO CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009761 hypO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009231 hypO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007355 hybO CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007756 hyb0 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006716 hybO CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005714 hybO CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006178 hybO CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006877 hyb0 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007761 hyb0 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005311 hyb0 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003050 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003017 hyb0 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003947 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007915 hyb0 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007156 hybO CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007403 hyb0 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007324 hybO CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112061 hyb0 CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084790 hyb0 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003820 hypO CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099811 hypO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006086 hybO CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006171 hybO CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004722 hybO CDS
Person Approved Go view Shigella boydii 227 ADV-0003149 hybO CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008838 hyb0 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003999 hyb0 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003512 hybO CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074427 hybO CDS
Person Approved Go view Shigella flexneri 301 ABT-0089291 hybO CDS
Person Approved Go view Shigella flexneri 8401 BAG-0003251 CDS
Person Approved Go view Shigella sonnei 046 ADD-0003433 hybO CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001703 hybO CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0010361 hyb0 CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002048 hybO CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001858 hybO CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002947 hybO CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012868 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004022 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3140143 to 3151261
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009818hybFCDScomplement31399773140318Downstream
ABE-0009824hybECDScomplement31403113140799Downstream
ABE-0009826hybDCDScomplement31407923141286Downstream
ABE-0009828hybCCDScomplement31412863142989Downstream
ABE-0009830hybBCDScomplement31429863144164Downstream
ABE-0009832hybACDScomplement31441543145140Downstream
ABE-0009834hybOCDScomplement31451433146261Matches
ABE-0009839yghWCDScomplement31464503146737Upstream
ABE-0009842yghX_3CDSpcomplement31468563147266Upstream
ABE-0285143yghXpseudogenecomplement31468563147740Upstream
ABE-0009844yghX_2CDSpcomplement31472663147619Upstream
ABE-0285762yqhICDSpcomplement31475973147740Upstream
ABE-0009848gprCDSforward31478973148937Upstream
ABE-0009850yqhACDScomplement31489773149471Upstream
ABE-0009859yghACDSforward31496623150546Upstream
ABE-0285569repeat_regionforward31505543150808Upstream
ABE-0009866exbDCDScomplement31508183151243Upstream
ABE-0009869exbBCDScomplement31512503151984Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.