Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009848 (gpr) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009848 showshow history
Names
gpr mgrA JW2970 ECK2995 yghZ b3001
Product
L-glyceraldehyde 3-phosphate reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3147897 3148937 1041 347
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001395 (IPR001395 (DEPRECATED) Aldo/keto reductase) Apr 2008
Automated Process Approved IPR005399 (IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related) Apr 2008
Automated Process Approved IPR023210 (IPR023210 NADP-dependent oxidoreductase domain) Jul 2018
Automated Process Approved IPR036812 (IPR036812 NADP-dependent oxidoreductase domain superfamily) Jul 2018
Automated Process Approved PF00248 (PF00248 Aldo/keto reductase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001395
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0005244 voltage-gated ion channel activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gpr Experimental - PubMed ID: 20015532
Reference: Escherichia coli K-12 MG1655 		Apr 2020
Person Approved synonym yghZ Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym JW2970 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK2995 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym mgrA Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3001 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product L-glyceraldehyde 3-phosphate reductase Experimental - PubMed ID: 18620424
Reference: Escherichia coli 		Apr 2020
Person Uncurated alternate product name putative oxidoreductase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001395 (DEPRECATED) Aldo/keto reductase Protein Sequence Similarity - InterPro Domain: IPR001395
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Protein Sequence Similarity - InterPro Domain: IPR005399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR023210 NADP-dependent oxidoreductase domain Protein Sequence Similarity - InterPro Domain: IPR023210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036812 NADP-dependent oxidoreductase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00248 Aldo/keto reductase family Protein Sequence Similarity - PFAM Model Name: PF00248
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.1.A.1 (transport; Channel-type Transporters; alpha-type channels; The Voltage-gated Ion Channel (VIC) Superfamily) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.93 (transport; substrate; ion) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009848 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947480 Published Annotation - Entrez Gene Database ID: 947480
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG13010 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:Q46851 Published Annotation - Swiss-Prot Accession Number: Q46851 Jan 2006
Automated Process Approved db xref GI:1789375 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:Q46851 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative reductase; GO_function: GO:0005244 - voltage-gated ion channel activity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76037.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005399
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0005244 voltage-gated ion channel activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001395
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002814 yghZ CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000454 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0110534 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082163 CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097677 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240562 tas3 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125269 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031187 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002792 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005429 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001823 yghZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001583 yghZ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000618 yghZ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001561 gpr CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000922 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000743 yghZ_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004576 yghZ_2 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004688 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0303534 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002664 tas3 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001163 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002518 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005756 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003116 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008118 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003076 yghZ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001188 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006150 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005566 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007836 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079908 gpr CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003454 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004067 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005652 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005541 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007904 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000271 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006170 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008429 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005671 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009149 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006015 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006953 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005934 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006448 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005757 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005340 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006185 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028027 yghZ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007640 gpr_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007862 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003515 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002802 yghZ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003072 yghZ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003636 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003369 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003537 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003452 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177622 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003347 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003285 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133942 yghZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005841 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003431 yghZ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000860 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002750 yghZ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001726 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002111 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001666 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002065 yghZ CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001942 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002820 yghZ CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001323 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010559 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001109 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0287956 yghZ CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005940 tas3 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000353 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002283 CDS
Person Approved Go view Shigella boydii 227 ADV-0003287 yghZ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008844 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003995 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003509 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074431 CDS
Person Approved Go view Shigella flexneri 301 ABT-0089294 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003254 CDS
Person Approved Go view Shigella sonnei 046 ADD-0003436 yghZ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003561 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002905 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003037 yghZ_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001771 yghZ_2 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002490 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240562 tas3 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006846 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002616 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006225 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000529 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125269 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007676 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007137 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003195 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008638 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005626 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031187 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007041 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001693 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002501 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005635 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005294 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002792 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003346 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001689 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007168 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002588 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22506mutantTn5 InsertionRequest the StrainABE-0009848gprb3001::Tn5KAN-I-SceI at position 324 in Plus orientation ,+ pKD460Blattner Laboratory
FB23263mutantTn5 InsertionRequest the StrainABE-0009848gprb3001::Tn5KAN-I-SceI at position 324 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3142897 to 3153937
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009828hybCCDScomplement31412863142989Upstream
ABE-0009830hybBCDScomplement31429863144164Upstream
ABE-0009832hybACDScomplement31441543145140Upstream
ABE-0009834hybOCDScomplement31451433146261Upstream
ABE-0009839yghWCDScomplement31464503146737Upstream
ABE-0009842yghX_3CDSpcomplement31468563147266Upstream
ABE-0285143yghXpseudogenecomplement31468563147740Upstream
ABE-0009844yghX_2CDSpcomplement31472663147619Upstream
ABE-0285762yqhICDSpcomplement31475973147740Upstream
ABE-0009848gprCDSforward31478973148937Matches
ABE-0009850yqhACDScomplement31489773149471Downstream
ABE-0009859yghACDSforward31496623150546Downstream
ABE-0285569repeat_regionforward31505543150808Downstream
ABE-0009866exbDCDScomplement31508183151243Downstream
ABE-0009869exbBCDScomplement31512503151984Downstream
ABE-0009878metCCDSforward31522363153423Downstream
ABE-0009882yghBCDSforward31535633154222Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.