Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009859 (yghA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009859 showshow history
Names
yghA JW2972 ECK2997 b3003
Product
NADPH-dependent aldehyde reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3149662 3150546 885 295
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002198 (IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR) Apr 2008
Automated Process Approved IPR002347 (IPR002347 Short-chain dehydrogenase/reductase SDR) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF13561 (PF13561 Enoyl-(Acyl carrier protein) reductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yghA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK2997 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2972 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3003 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADPH-dependent aldehyde reductase Experimental - PubMed ID: 25108218
Reference: Escherichia coli K-12 BW25113 		Sep 2021
Automated Process Approved alternate product name predicted oxidoreductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name putative oxidoreductase, NAD(P)-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name putative glutathionylspermidine synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2021
Person Approved alternate product name putative oxidoreductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR002198 (DEPRECATED) Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13561 Enoyl-(Acyl carrier protein) reductase Protein Sequence Similarity - PFAM Model Name: PF13561
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002347 Short-chain dehydrogenase/reductase SDR Protein Sequence Similarity - InterPro Domain: IPR002347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.-.-.- Published Annotation - Swiss-Prot Accession Number: P0AG84 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AG84 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789378 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AG84 Published Annotation - Swiss-Prot Accession Number: P0AG84 Jan 2006
Automated Process Approved db xref EcoGene:EG11292 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947478 Published Annotation - Entrez Gene Database ID: 947478
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0009859 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative oxidoreductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76039.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002198
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004321 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002454 yghA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002469 yghA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007450 yghA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002358 yghA CDS
Ortholog
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016500 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0305446 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000556 yghA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000489 yghA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005754 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003118 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008116 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003078 yghA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001186 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006148 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005564 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007834 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079910 yghA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003456 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004069 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005650 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005543 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003509 yghA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007906 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000273 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007655 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006172 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008431 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005669 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009151 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006013 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006955 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005936 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006450 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005759 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005342 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006187 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028029 yghA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007638 yghA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007864 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003517 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002804 yghA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003074 yghA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003638 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003367 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003535 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003454 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177624 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003349 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003287 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133944 yghA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005843 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003433 yghA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000975 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001847 CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001731 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001284 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002722 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007498 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004691 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003624 yghA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007757 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009781 yghA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009248 yghA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007347 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007764 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006724 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005722 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006187 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006886 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007769 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005303 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003057 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003024 yghA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003956 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007923 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007148 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007411 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007332 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112071 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084796 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003829 yghA CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099832 yghA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006077 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006163 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004714 CDS
Person Approved Go view Shigella boydii 227 ADV-0003289 yghA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008846 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003993 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003504 yghA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074433 yghA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089296 yghA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003256 yghA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003438 yghA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000865 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009728 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001747 lvr CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22684mutantTn5 InsertionRequest the StrainABE-0009859yghAyghA::Tn5KAN-I-SceI at position 442 in Minus orientation ,+ pKD460Blattner Laboratory
FB23265mutantTn5 InsertionRequest the StrainABE-0009859yghAyghA::Tn5KAN-I-SceI at position 442 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3144662 to 3155546
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009832hybACDScomplement31441543145140Upstream
ABE-0009834hybOCDScomplement31451433146261Upstream
ABE-0009839yghWCDScomplement31464503146737Upstream
ABE-0009842yghX_3CDSpcomplement31468563147266Upstream
ABE-0285143yghXpseudogenecomplement31468563147740Upstream
ABE-0009844yghX_2CDSpcomplement31472663147619Upstream
ABE-0285762yqhICDSpcomplement31475973147740Upstream
ABE-0009848gprCDSforward31478973148937Upstream
ABE-0009850yqhACDScomplement31489773149471Upstream
ABE-0009859yghACDSforward31496623150546Matches
ABE-0285569repeat_regionforward31505543150808Downstream
ABE-0009866exbDCDScomplement31508183151243Downstream
ABE-0009869exbBCDScomplement31512503151984Downstream
ABE-0009878metCCDSforward31522363153423Downstream
ABE-0009882yghBCDSforward31535633154222Downstream
ABE-0009884yqhCCDScomplement31542623155218Downstream
ABE-0009888yqhDCDSforward31553553156518Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.