Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009869 (exbB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009869 showshow history
Names
exbB JW2974 ECK2999 b3006
Product
membrane spanning protein in TonB-ExbB-ExbD complex
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3151250 3151984 735 245
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001099
EnteroFam0009869: Trusted threshold=584.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR014164 (IPR014164 TonB-system energizer ExbB type-1) Apr 2008
Automated Process Approved IPR002898 (IPR002898 MotA/TolQ/ExbB proton channel) Apr 2008
Automated Process Approved PF01618 (PF01618 MotA/TolQ/ExbB proton channel family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014164
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014164
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name exbB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2999 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2974 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3006 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane spanning protein in TonB-ExbB-ExbD complex Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name uptake of enterochelin; tonB-dependent uptake of B colicins Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name uptake of enterobactin; tonB-dependent uptake of B colicins Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009869: Trusted threshold=584.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001099
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002898 MotA/TolQ/ExbB proton channel Protein Sequence Similarity - InterPro Domain: IPR002898
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01618 MotA/TolQ/ExbB proton channel family Protein Sequence Similarity - PFAM Model Name: PF01618
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014164 TonB-system energizer ExbB type-1 Protein Sequence Similarity - InterPro Domain: IPR014164
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.7 (cell processes; adaptation to stress; Fe aquisition) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.C.1 (transport; Electrochemical potential driven transporters; Ion-gradient-driven energizers; TonB Family of Auxiliary Proteins for Energization of OMR-mediated Transport) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.51 (transport; substrate; enterochelin) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10271 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945420 Published Annotation - Entrez Gene Database ID: 945420
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0ABU7 Published Annotation - Swiss-Prot Accession Number: P0ABU7 Jan 2006
Automated Process Approved db xref GI:1789381 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABU7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009869 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note uptake of enterochelin; tonB-dependent uptake of B colicins; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006826 - iron ion transport Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76042.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006826 iron ion transport Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014164
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002898
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014164
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001099 exbB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001252 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001353 exbB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001515 exbB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000810 exbB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001689 exbB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000710 exbB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000247 exbB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000737 exbB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004581 exbB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008888 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016541 exbB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000354 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004682 exbB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305459 exbB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000553 exbB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000486 exbB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002520 exbB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005752 exbB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003120 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008114 exbB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003080 exbB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001184 exbB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006146 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005562 exbB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007831 ExbB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079912 exbB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003459 exbB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004071 exbB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005648 exbB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005545 exbB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003511 exbB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007909 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000276 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007657 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006174 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008433 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005667 exbB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009153 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006011 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006957 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005938 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006453 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005761 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005344 exbB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006189 exbB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028032 exbB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007636 exbB_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007867 exbB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003519 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002806 exbB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003076 exbB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003640 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003365 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003533 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003456 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177626 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003352 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003289 exbB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133947 exbB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005846 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003435 exbB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003183 exbB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0004015 exbB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003435 exbB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001733 exbB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008643 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002546 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002817 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002637 exbB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001384 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003433 exbB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000766 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011092 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000196 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290517 exbB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006389 exbB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060576 exbB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000223 exbB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003471 exbB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001922 exbB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004860 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145794 exbB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000070 exbB-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007500 exbB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004689 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003626 exbB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007759 exbB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009787 exbB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009254 exbB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007345 exbB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007766 exbB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006726 exbB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005724 exbB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006189 exbB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006888 exbB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007771 exbB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005301 exbB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003059 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003026 exbB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003958 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007925 exbB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007146 exbB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007413 exbB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007334 exbB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112076 exbB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084798 exbB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003831 exbB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099836 exbB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006075 exbB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006161 exbB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004712 exbB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001646 exbB CDS
Person Approved Go view Shigella boydii 227 ADV-0003292 exbB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008848 exbB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003991 exbB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003502 exbB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074437 exbB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089298 exbB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003258 exbB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003440 exbB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006716 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000302 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010458 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002001 exbB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001884 exbB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001424 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241493 exbB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004372 exbB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003724 exbB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006103 exbB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002644 exbB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117575 exbB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005023 exbB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005164 exbB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000761 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009295 exbB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006332 exbB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033269 exbB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004397 exbB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000665 exbB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000545 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004670 exbB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004534 exbB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003492 exbB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004206 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000784 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007145 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002596 exbB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21009mutantTn5 InsertionRequest the StrainABE-0009869exbBexbB::Tn5KAN-I-SceI at position 111 in Plus orientation ,+ pKD460Blattner Laboratory
FB21010mutantTn5 InsertionRequest the StrainABE-0009869exbBexbB::Tn5KAN-I-SceI at position 111 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3146250 to 3156984
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009834hybOCDScomplement31451433146261Downstream
ABE-0009839yghWCDScomplement31464503146737Downstream
ABE-0009842yghX_3CDSpcomplement31468563147266Downstream
ABE-0285143yghXpseudogenecomplement31468563147740Downstream
ABE-0009844yghX_2CDSpcomplement31472663147619Downstream
ABE-0285762yqhICDSpcomplement31475973147740Downstream
ABE-0009848gprCDSforward31478973148937Downstream
ABE-0009850yqhACDScomplement31489773149471Downstream
ABE-0009859yghACDSforward31496623150546Downstream
ABE-0285569repeat_regionforward31505543150808Downstream
ABE-0009866exbDCDScomplement31508183151243Downstream
ABE-0009869exbBCDScomplement31512503151984Matches
ABE-0009878metCCDSforward31522363153423Upstream
ABE-0009882yghBCDSforward31535633154222Upstream
ABE-0009884yqhCCDScomplement31542623155218Upstream
ABE-0009888yqhDCDSforward31553553156518Upstream
ABE-0009892dkgACDSforward31566233157450Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.