Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009878 (metC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009878 showshow history
Names
metC JW2975 ECK3000 b3008
Product
cystathionine beta-lyase/L-cysteine desulfhydrase/alanine racemase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3152236 3153423 1188 396
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001100
EnteroFam0009878: Trusted threshold=1051.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR000277 (IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme) Apr 2008
Automated Process Approved IPR015422 (IPR015422 Pyridoxal phosphate-dependent transferase, small domain) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR006233 (IPR006233 Cystathionine beta-lyase, bacterial) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved PF01053 (PF01053 Cys/Met metabolism PLP-dependent enzyme) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009086 methionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000277
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006233
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004121 cystathionine beta-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006233
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name metC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW2975 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3000 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3008 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product cystathionine beta-lyase/L-cysteine desulfhydrase/alanine racemase Published Annotation - EcoCyc Accession Number: EG10583
Reference: Escherichia coli K-12 MG1655
Oct 2021
Person Approved alternate product name cystathionine beta-lyase (beta-cystathionase) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Person Approved alternate product name cystathionine beta-lyase, PLP-dependent Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name cystathionine beta-lyase, PLP-dependent (beta-cystathionase) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009878: Trusted threshold=1051.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001100
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR006233 Cystathionine beta-lyase, bacterial Protein Sequence Similarity - InterPro Domain: IPR006233
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF01053 Cys/Met metabolism PLP-dependent enzyme Protein Sequence Similarity - PFAM Model Name: PF01053
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR015422 Pyridoxal phosphate-dependent transferase, small domain Protein Sequence Similarity - InterPro Domain: IPR015422
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme Protein Sequence Similarity - InterPro Domain: IPR000277
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 4.4.1.8 Published Annotation - Swiss-Prot Accession Number: P06721 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.9 (metabolism; building block biosynthesis; amino acids; methionine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946240 Published Annotation - Entrez Gene Database ID: 946240
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P06721 Published Annotation - Swiss-Prot Accession Number: P06721 Jan 2005
Automated Process Approved db xref GI:1789383 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06721 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0009878 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10583 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Methionine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note cystathionine beta-lyase (beta-cystathionase); GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009086 - methionine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC76044.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000277
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009086 methionine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006233
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0004121 cystathionine beta-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006233
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015422
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001100 metC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001246 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000511 metC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000466 metC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001331 metC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000169 metC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002011 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003994 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000708 metC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000246 metC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000736 metC_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004582 metC_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008890 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016540 metC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000353 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004681 metC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305462 metC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000552 metC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000485 metC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002521 metC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005751 metC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003121 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008113 metC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003081 metC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001183 metC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006145 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005561 metC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007830 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079913 metC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003460 metC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004072 metC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005647 metC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005546 metC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003512 metC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007910 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000278 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007658 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006175 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008434 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005666 metC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009154 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006010 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006958 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005939 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006454 metC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005762 metC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005345 metC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006190 metC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028034 metC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007635 metC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007868 metC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003521 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002807 metC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003077 metC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003642 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003363 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003531 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003457 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177627 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003354 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003290 metC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133949 metC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005847 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003437 metC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003188 metC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003437 metC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001734 metC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008645 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002550 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002821 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002652 metC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001367 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003448 metC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000751 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011096 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000200 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290505 metC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006393 metC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060572 metC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000234 metC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000121 metC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001918 metC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004854 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145799 metC CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004339 metC-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007502 metC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004688 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003631 metC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007761 metC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009791 metC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009258 metC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007343 metC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007768 metC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006728 metC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005726 metC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006191 metC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006890 metC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007773 metC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005299 metC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003061 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003028 metC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003960 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007927 metC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007144 metC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007415 metC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007336 metC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112079 metC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084800 metC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003833 metC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099842 metC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006073 metC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006159 metC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004710 metC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001645 metC CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265772 metC CDS
Person Approved Go view Shigella boydii 227 ADV-0003294 metC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008849 metC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003990 metC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003500 metC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074439 metC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089300 metC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003259 metC CDS
Person Approved Go view Shigella sonnei 046 ADD-0003442 metC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001744 VC1671 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006713 metC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000301 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010461 metC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002000 metC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001885 metC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001425 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241492 metC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004373 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003726 metC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006102 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002645 metC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117572 metC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005024 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005165 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000762 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009296 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006333 metC1 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033270 metC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004396 metC1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000664 metC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000544 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004669 metC1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004533 metC1 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003493 metC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004208 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000783 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007137 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002597 metC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22090mutantTn5 InsertionRequest the StrainABE-0009878metCmetC::Tn5KAN-I-SceI at position 807 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3147236 to 3158423
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009842yghX_3CDSpcomplement31468563147266Upstream
ABE-0285143yghXpseudogenecomplement31468563147740Upstream
ABE-0009844yghX_2CDSpcomplement31472663147619Upstream
ABE-0285762yqhICDSpcomplement31475973147740Upstream
ABE-0009848gprCDSforward31478973148937Upstream
ABE-0009850yqhACDScomplement31489773149471Upstream
ABE-0009859yghACDSforward31496623150546Upstream
ABE-0285569repeat_regionforward31505543150808Upstream
ABE-0009866exbDCDScomplement31508183151243Upstream
ABE-0009869exbBCDScomplement31512503151984Upstream
ABE-0009878metCCDSforward31522363153423Matches
ABE-0009882yghBCDSforward31535633154222Downstream
ABE-0009884yqhCCDScomplement31542623155218Downstream
ABE-0009888yqhDCDSforward31553553156518Downstream
ABE-0009892dkgACDSforward31566233157450Downstream
ABE-0009895yqhGCDSforward31576503158576Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.