Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009910 (plsC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009910 showshow history
Names
plsC parF JW2986 ECK3009 b3018
Product
1-acyl-sn-glycerol-3-phosphate acyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3162744 3163481 738 246
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001106
EnteroFam0009910: Trusted threshold=652.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002123 (IPR002123 Phospholipid/glycerol acyltransferase) Apr 2008
Automated Process Approved IPR004552 (IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase) Apr 2008
Automated Process Approved PF01553 (PF01553 Acyltransferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004552
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004552
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016746 acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002123
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004552
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name plsC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved synonym parF Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2986 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3009 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3018 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 1-acyl-sn-glycerol-3-phosphate acyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 1-acyl-sn-glycerol-3-phosphate acyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009910: Trusted threshold=652.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001106
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase Protein Sequence Similarity - InterPro Domain: IPR004552
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002123 Phospholipid/glycerol acyltransferase Protein Sequence Similarity - InterPro Domain: IPR002123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01553 Acyltransferase Protein Sequence Similarity - PFAM Model Name: PF01553
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.3.1.51 Published Annotation - Swiss-Prot Accession Number: P26647 Feb 2006
Automated Process Uncurated EC number 2.3.-.- Published Annotation - Database Name: EC2GO: GO:0016746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.1 (metabolism; macromolecules (cellular constituent) biosynthesis; phospholipid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11377 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789395 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P26647 Published Annotation - Swiss-Prot Accession Number: P26647 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P26647 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009910 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947496 Published Annotation - Entrez Gene Database ID: 947496
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Macromolecule synthesis, modification: Phospholipids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0008654 - phospholipid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76054.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0008654 phospholipid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008654 phospholipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004552
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004552
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002123
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016746 acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002123
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004552
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001106 plsC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001243 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000510 plsC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000255 plsC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000464 plsC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000754 plsC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002004 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003987 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000699 plsC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000728 plsC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004593 plsC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008897 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016530 plsC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000345 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004671 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305487 plsC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000545 plsC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000478 plsC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002483 plsC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005740 plsC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003137 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008102 plsC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003097 plsC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001167 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006133 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005550 plsC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007820 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079929 plsC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003472 plsC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005637 plsC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005557 plsC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003528 plsC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007920 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000289 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007669 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006186 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008445 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005656 plsC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009165 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006000 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006970 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005950 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006465 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005773 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005356 plsC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006201 plsC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028044 plsC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007619 plsC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007877 plsC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003537 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002815 plsC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003086 plsC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003651 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003354 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003522 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003473 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177645 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003363 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003307 plsC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133959 plsC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005858 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003453 plsC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003193 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001060 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003445 plsC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001743 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008657 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002555 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002826 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002658 plsC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001360 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003454 plsC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000745 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011101 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000205 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0290494 plsC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006398 plsC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060564 plsC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000220 plsC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001307 plsC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001042 plsC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004845 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145816 plsC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007521 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004679 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003644 plsC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007775 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009839 plsC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009305 plsC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007330 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007782 plsC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006741 plsC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005742 plsC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006204 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006904 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007787 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005285 plsC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003074 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003041 plsC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003978 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007941 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007131 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007430 plsC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007351 plsC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112107 plsC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084813 plsC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003851 plsC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099875 plsC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006059 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006143 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004697 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001629 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264118 plsC CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003164 plsC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008869 plsC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003978 plsC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003667 plsC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074449 plsC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089309 plsC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003268 plsC CDS
Person Approved Go view Shigella sonnei 046 ADD-0003451 plsC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002613 VC2513 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000019 plsC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007304 plsC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000294 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010489 parF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001993 parF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001893 plsC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001432 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241477 plsC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004379 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003735 plsC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006094 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002652 plsC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117545 plsC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005031 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005172 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002847 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009303 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006340 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033280 plsC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004388 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000655 plsC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000533 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004662 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004525 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003500 plsC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004217 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000774 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007106 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002606 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3157744 to 3168481
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009895yqhGCDSforward31576503158576Downstream
ABE-0009898yqhHCDSforward31586273158884Downstream
ABE-0174099ygiQCDScomplement31589273161146Downstream
ABE-0009905ftsPCDScomplement31612573162669Downstream
ABE-0009910plsCCDScomplement31627443163481Matches
ABE-0285570repeat_regionforward31636443163673Upstream
ABE-0009916parCCDScomplement31637153165973Upstream
ABE-0009920ygiSCDScomplement31661113167718Upstream
ABE-0009923mqsACDScomplement31678513168246Upstream
ABE-0009925mqsRCDScomplement31682483168544Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.