Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009946 (mdaB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009946 showshow history
Names
mdaB mda66 JW2996 ECK3019 b3028
Product
NADPH quinone reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3172530 3173111 582 194
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003680 (IPR003680 Flavodoxin-like fold) Apr 2008
Automated Process Approved IPR029039 (IPR029039 Flavoprotein-like superfamily) Jul 2018
Automated Process Approved PF02525 (PF02525 Flavodoxin-like fold) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mdaB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3019 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym mda66 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW2996 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3028 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product NADPH quinone reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name modulator of drug activity B Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR029039 Flavoprotein-like superfamily Protein Sequence Similarity - InterPro Domain: IPR029039
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003680 Flavodoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR003680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02525 Flavodoxin-like fold Protein Sequence Similarity - PFAM Model Name: PF02525
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 1.-.-.- Protein Sequence Similarity - InterPro Domain: IPR003680
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved EC number 1.6.5.10 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12656 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009946 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947512 Published Annotation - Entrez Gene Database ID: 947512
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEY5 Published Annotation - Swiss-Prot Accession Number: P0AEY5 Jan 2006
Automated Process Approved db xref GI:1789406 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEY5 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function phenotype; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note modulator of drug activity B; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76064.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002680 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001815 mdaB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001789 mdaB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001873 mdaB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001979 mdaB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000694 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000227 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000723 mdaB_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004598 mdaB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008899 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0016526 mdaB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000343 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004666 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305500 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000476 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002476 mdaB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005732 mdaB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003144 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008092 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003107 mdaB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001159 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006120 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005543 mdaB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007813 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079939 mdaB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003481 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004092 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005630 mdaB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005565 mdaB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003535 mdaB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007926 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000298 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007676 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006193 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008452 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005649 mdaB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009172 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005993 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006977 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005957 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006472 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005780 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005363 mdaB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006208 mdaB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028051 mdaB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007610 mdaB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007887 mdaB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003547 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002825 mdaB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003096 mdaB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003659 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003344 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003510 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003484 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177656 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003371 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003314 mdaB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133967 mdaB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005867 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003464 mdaB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003195 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002734 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003451 mdaB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001748 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008659 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002558 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002829 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002666 mdaB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001351 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003462 mdaB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000736 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011110 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000208 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006401 mdaB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060555 mdaB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000112 mdaB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001029 mdaB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004833 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007527 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004672 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003650 mdaB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007782 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009863 mdaB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009328 mdaB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007324 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007788 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006747 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005747 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006210 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006910 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007794 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005278 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003080 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003047 mdaB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003984 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007947 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007124 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007435 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007356 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003858 mdaB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099894 mdaB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006053 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006136 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004691 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001626 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003170 mdaB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008875 mdaB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003970 mdaB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003660 mdaB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074457 mdaB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089315 mdaB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003274 mdaB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003457 mdaB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000292 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010497 mda66 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001990 mda66 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001904 mda66 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001434 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241474 mdaB3 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004381 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003737 mdaB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006091 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002654 mdaB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117540 mdaB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005033 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005174 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002849 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009305 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006342 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033283 mdaB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004386 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000653 mdaB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000530 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004660 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004523 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003502 mdaB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004219 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000772 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007074 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002612 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21011mutantTn5 InsertionRequest the StrainABE-0009946mdaBmdaB::Tn5KAN-I-SceI at position 285 in Minus orientation ,- pKD465Blattner Laboratory
FB21012mutantTn5 InsertionRequest the StrainABE-0009946mdaBmdaB::Tn5KAN-I-SceI at position 285 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3167530 to 3178111
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009920ygiSCDScomplement31661113167718Upstream
ABE-0009923mqsACDScomplement31678513168246Upstream
ABE-0009925mqsRCDScomplement31682483168544Upstream
ABE-0009928ygiVCDScomplement31687493169231Upstream
ABE-0009930ygiWCDScomplement31692843169676Upstream
ABE-0009936qseBCDSforward31698283170487Upstream
ABE-0009938qseCCDSforward31704843171833Upstream
ABE-0009940ygiZCDScomplement31718793172211Upstream
ABE-0009946mdaBCDSforward31725303173111Matches
ABE-0009948ygiNCDSforward31731423173456Downstream
ABE-0009950parECDScomplement31735043175396Downstream
ABE-0009953yqiACDScomplement31754253176006Downstream
ABE-0009957cpdACDScomplement31760063176833Downstream
ABE-0009959yqiBCDScomplement31768583177280Downstream
ABE-0009961nudFCDScomplement31772813177910Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.