Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009948 (ygiN) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009948 showshow history
Names
ygiN JW2997 ECK3020 b3029
Product
quinol monooxygenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3173142 3173456 315 105
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005479 (IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain) Apr 2008
Automated Process Approved IPR011008 (IPR011008 Dimeric alpha-beta barrel) Apr 2008
Automated Process Approved IPR007138 (IPR007138 Antibiotic biosynthesis monooxygenase domain) Apr 2008
Automated Process Approved PF03992 (PF03992 Antibiotic biosynthesis monooxygenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0017000 antibiotic biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005479
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ygiN Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW2997 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3020 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3029 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product quinol monooxygenase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name conserved hypothetical protein Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain Protein Sequence Similarity - InterPro Domain: IPR005479
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011008 Dimeric alpha-beta barrel Protein Sequence Similarity - InterPro Domain: IPR011008
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR007138 Antibiotic biosynthesis monooxygenase domain Protein Sequence Similarity - InterPro Domain: IPR007138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03992 Antibiotic biosynthesis monooxygenase Protein Sequence Similarity - PFAM Model Name: PF03992
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 1.-.-.- Protein Sequence Similarity - InterPro Domain: IPR007138
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated EC number 6.3.-.- Protein Sequence Similarity - InterPro Domain: IPR005479
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12657 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ADU2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947506 Published Annotation - Entrez Gene Database ID: 947506
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0009948 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ADU2 Published Annotation - Swiss-Prot Accession Number: P0ADU2 Jan 2006
Automated Process Approved db xref GI:1789407 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76065.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0017000 antibiotic biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005479
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007138
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0006842 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002487 ygiN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002487 ygiN CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002210 ygiN CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002428 ygiN CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000693 ygiN CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000226 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000722 ygiN CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004599 ygiN CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004665 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000475 ygiN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002475 ygiN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005731 ygiN CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003145 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008091 ygiN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001158 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006119 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005542 ygiN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007812 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079940 ygiN CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004093 ygiN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005629 ygiN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005566 ygiN CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003536 ygiN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007927 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000299 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007677 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006194 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008453 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005648 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009173 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005992 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006978 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005958 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006473 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005781 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005364 ygiN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006209 ygiN CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028052 ygiN CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007609 ygiN CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007888 ygiN CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002826 ygiN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003097 ygiN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003660 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003343 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003509 CDS
Person Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177657 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0003372 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003315 ygiN CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133968 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005868 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003466 ygiN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003196 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003452 ygiN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001749 CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000735 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007528 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004671 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003651 ygiN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007783 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009865 ygiN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009330 ygiN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007323 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007789 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006748 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005748 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006211 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006911 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007795 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005277 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003081 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003048 ygiN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003985 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007948 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007123 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007436 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007357 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112123 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084820 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003859 ygiN CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0099897 ygiN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006052 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006135 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004690 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001625 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003171 ygiN CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008876 ygiN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003969 ygiN CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003659 ygiN CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074458 ygiN CDS
Person Approved Go view Shigella flexneri 301 ABT-0089316 ygiN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003275 ygiN CDS
Person Approved Go view Shigella sonnei 046 ADD-0003458 ygiN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000291 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010500 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001989 ygiN CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001905 ygiN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001435 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007072 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002613 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3168142 to 3178456
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009923mqsACDScomplement31678513168246Upstream
ABE-0009925mqsRCDScomplement31682483168544Upstream
ABE-0009928ygiVCDScomplement31687493169231Upstream
ABE-0009930ygiWCDScomplement31692843169676Upstream
ABE-0009936qseBCDSforward31698283170487Upstream
ABE-0009938qseCCDSforward31704843171833Upstream
ABE-0009940ygiZCDScomplement31718793172211Upstream
ABE-0009946mdaBCDSforward31725303173111Upstream
ABE-0009948ygiNCDSforward31731423173456Matches
ABE-0009950parECDScomplement31735043175396Downstream
ABE-0009953yqiACDScomplement31754253176006Downstream
ABE-0009957cpdACDScomplement31760063176833Downstream
ABE-0009959yqiBCDScomplement31768583177280Downstream
ABE-0009961nudFCDScomplement31772813177910Downstream
ABE-0009965tolCCDSforward31781153179596Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.