Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009957 (cpdA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009957 showshow history
Names
cpdA JW3000 ECK3023 icc b3032
Product
cyclic 3',5'-adenosine monophosphate phosphodiesterase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3176006 3176833 828 276
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001108
EnteroFam0009957: Trusted threshold=730.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004843 (IPR004843 Calcineurin-like phosphoesterase domain, apaH type) Apr 2008
Automated Process Approved IPR013622 (IPR013622 (DEPRECATED) 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal) Apr 2008
Automated Process Approved PF00149 (PF00149 Calcineurin-like phosphoesterase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0008233 peptidase activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name cpdA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym icc Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3023 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3000 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3032 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cyclic 3',5'-adenosine monophosphate phosphodiesterase Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name 3',5' cAMP phosphodiesterase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0009957: Trusted threshold=730.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001108
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013622 (DEPRECATED) 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013622
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004843 Calcineurin-like phosphoesterase domain, apaH type Protein Sequence Similarity - InterPro Domain: IPR004843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00149 Calcineurin-like phosphoesterase Protein Sequence Similarity - PFAM Model Name: PF00149
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.-.-.- Protein Sequence Similarity - InterPro Domain: IPR004843
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved EC number 3.1.4.17 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.1.3.4 (regulation; type of regulation; posttranscriptional; proteases, cleavage of compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12187 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789410 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEW4 Published Annotation - Swiss-Prot Accession Number: P0AEW4 Jan 2006
Automated Process Approved db xref GeneID:947515 Published Annotation - Entrez Gene Database ID: 947515
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEW4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009957 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function regulator; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_function: GO:0008233 - peptidase activity; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76068.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004843
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0008233 peptidase activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001108 cpdA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001239 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000841 cpdA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000706 cpdA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000968 cpdA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000301 cpdA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001998 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003975 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000681 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000223 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000718 icc CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004606 icc CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008903 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016521 cpdA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000339 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004651 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305562 icc CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000523 icc CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000471 icc CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002472 icc CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005728 icc CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003154 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008088 icc CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003117 icc CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001148 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006116 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005539 icc CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007809 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079949 cpdA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003495 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004096 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005626 icc CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005569 icc CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003545 cpdA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007930 icc CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000308 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007686 icc CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006203 icc CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008462 icc CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005639 icc CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009182 icc CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005983 icc CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006987 icc CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005967 icc CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006482 icc CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005790 icc CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005373 icc CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006218 icc CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028062 cpdA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007591 cpdA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007891 icc CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003557 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002829 cpdA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003100 cpdA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003663 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003331 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003506 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003494 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177668 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003375 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003325 icc CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133977 cpdA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005877 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003475 icc CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003201 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001047 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003455 cpdA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001758 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008663 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002563 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002834 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002670 icc CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001347 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003466 icc CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000732 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011115 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000213 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290475 cpdA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006406 icc CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060551 cpdA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000216 icc CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001302 icc CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001025 cpdA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004828 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145826 icc CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005043 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007531 icc CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004668 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003654 cpdA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007787 icc CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009875 icc CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009340 icc CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007319 icc CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007793 icc CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006752 icc CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005752 icc CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006215 icc CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007799 icc CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005273 icc CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003084 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003051 cpdA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003989 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007952 icc CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007120 icc CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007440 icc CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007361 icc CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112129 cpdA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084823 cpdA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003862 icc CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099902 cpdA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006049 icc CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006131 icc CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004686 icc CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001621 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267544 icc CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003174 icc CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008879 icc CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003966 icc CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003656 icc CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074461 icc CDS
Person Approved Go view Shigella flexneri 301 ABT-0089319 icc CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003278 icc CDS
Person Approved Go view Shigella sonnei 046 ADD-0003461 cpdA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004355 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002526 VC2433 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007311 cpdA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000287 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010512 icc CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001985 cpdA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001909 cpdA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001439 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241470 cpdA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004385 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003741 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006087 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002658 cpdA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117530 cpdA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005037 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005178 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000685 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006346 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033287 cpdA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004382 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000649 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000526 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004656 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004519 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003506 cpdA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004223 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000768 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007049 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002616 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22091mutantTn5 InsertionRequest the StrainABE-0009957cpdAicc::Tn5KAN-I-SceI at position 332 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3171006 to 3181833
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009938qseCCDSforward31704843171833Downstream
ABE-0009940ygiZCDScomplement31718793172211Downstream
ABE-0009946mdaBCDSforward31725303173111Downstream
ABE-0009948ygiNCDSforward31731423173456Downstream
ABE-0009950parECDScomplement31735043175396Downstream
ABE-0009953yqiACDScomplement31754253176006Overlaps Downstream
ABE-0009957cpdACDScomplement31760063176833Matches
ABE-0009959yqiBCDScomplement31768583177280Upstream
ABE-0009961nudFCDScomplement31772813177910Upstream
ABE-0009965tolCCDSforward31781153179596Upstream
ABE-0009969ygiBCDSforward31797443180415Upstream
ABE-0009971ygiCCDSforward31804213181581Upstream
ABE-0285571repeat_regionforward31815903181613Upstream
ABE-0009973ygiDCDScomplement31816193182407Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.