Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009965 (tolC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009965 showshow history
Names
tolC weeA ECK3026 JW5503 hasF toc colE1-i refI mtcB mukA b3035
Product
transport channel
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3178115 3179596 1482 494
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001111
EnteroFam0009965: Trusted threshold=1106.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010130 (IPR010130 Type I secretion outer membrane protein, TolC) Apr 2008
Automated Process Approved IPR003423 (IPR003423 Outer membrane efflux protein) Apr 2008
Automated Process Approved PF02321 (PF02321 Outer membrane efflux protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015031 protein transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003423, IPR010130
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003423
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015562 efflux transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003423, IPR010130
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003423
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tolC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym refI Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym mtcB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym toc Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym weeA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Automated Process Approved synonym hasF Published Annotation - GenBank Accession Number: AL590842
Reference: Yersinia pestis CO92 		Sep 2007
Person Approved synonym JW5503 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3026 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym colE1-i Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym mukA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3035 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product transport channel Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name outer membrane channel; tolerance to colicin E1, segregation of daughter chromosomes, role in organic solvent tolerance Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0009965: Trusted threshold=1106.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001111
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF02321 Outer membrane efflux protein Protein Sequence Similarity - PFAM Model Name: PF02321
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003423 Outer membrane efflux protein Protein Sequence Similarity - InterPro Domain: IPR003423
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010130 Type I secretion outer membrane protein, TolC Protein Sequence Similarity - InterPro Domain: IPR010130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.4 (location of gene products; outer membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11009 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082199 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P02930 Published Annotation - Swiss-Prot Accession Number: P02930 Jan 2005
Automated Process Approved db xref ASAP:ABE-0009965 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947521 Published Annotation - Entrez Gene Database ID: 947521
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P02930 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative membrane; Cell division Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0009279 - cell outer membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76071.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Outer Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015031 protein transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003423, IPR010130
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003423
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0009279 cell outer membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010130
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0015562 efflux transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003423, IPR010130
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003423
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001111 tolC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001236 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000759 tolC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000623 tolC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000358 tolC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001157 tolC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001995 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003972 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000678 tolC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000220 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000715 tolC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004609 tolC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008906 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015732 tolC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000336 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004648 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305569 tolC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000520 tolC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000468 tolC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002469 tolC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005725 tolC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003157 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008085 tolC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003120 tolC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001145 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006112 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005536 tolC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007806 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079952 tolC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003498 tolC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004099 tolC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005623 tolC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005572 tolC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003548 tolC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007933 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000311 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007689 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006206 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008465 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005636 tolC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009185 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005980 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006990 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005970 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006485 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005793 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005376 tolC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006221 tolC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028065 tolC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007588 tolC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007894 tolC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003559 tolC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002832 tolC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003103 tolC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003666 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003328 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003503 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003497 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177672 tolC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003378 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003328 tolC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133980 tolC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005880 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003478 tolC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003204 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001044 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003458 tolC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001761 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008666 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002566 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002838 tolC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002673 tolC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001344 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003469 tolC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000729 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011118 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000216 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290472 tolC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006409 tolC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060548 tolC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003082 tolC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000111 tolC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001022 tolC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004823 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145833 tolC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007534 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004665 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003657 tolC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007790 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009882 tolC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009347 tolC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007316 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007796 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006755 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005755 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006218 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006926 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007802 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005270 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003087 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003054 tolC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003992 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007955 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007117 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007443 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007364 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112133 tolC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084826 tolC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003865 tolC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099911 tolC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006046 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006128 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004683 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001618 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267547 tolC CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003177 tolC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008882 tolC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003963 tolC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003653 tolC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074464 tolC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089322 tolC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003281 tolC CDS
Person Approved Go view Shigella sonnei 046 ADD-0003464 tolC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002529 VC2436 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007316 tolC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000284 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010517 hasF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001982 tolC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003791 tolC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001442 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241467 tolC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004388 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003745 tolC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006083 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002661 tolC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117524 tolC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005041 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005181 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000688 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009313 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006350 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033290 tolC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004379 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000645 tolC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000522 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004653 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004516 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003509 tolC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004226 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000764 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007037 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002619 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22092mutantTn5 InsertionRequest the StrainABE-0009965tolCtolC::Tn5KAN-I-SceI at position 644 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3173115 to 3184596
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009948ygiNCDSforward31731423173456Upstream
ABE-0009950parECDScomplement31735043175396Upstream
ABE-0009953yqiACDScomplement31754253176006Upstream
ABE-0009957cpdACDScomplement31760063176833Upstream
ABE-0009959yqiBCDScomplement31768583177280Upstream
ABE-0009961nudFCDScomplement31772813177910Upstream
ABE-0009965tolCCDSforward31781153179596Matches
ABE-0009969ygiBCDSforward31797443180415Downstream
ABE-0009971ygiCCDSforward31804213181581Downstream
ABE-0285571repeat_regionforward31815903181613Downstream
ABE-0009973ygiDCDScomplement31816193182407Downstream
ABE-0009977zupTCDSforward31825503183323Downstream
ABE-0285758yqiDCDScomplement31833813183551Downstream
ABE-0009980ribBCDScomplement31838133184466Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.