Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010015 (hldE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010015 showshow history
Names
hldE yqiF waaE gmhC JW3024 ECK3042 rfaE b3052
Product
bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3195320 3196753 1434 478
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001116
EnteroFam0010015: Trusted threshold=1326.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR011913 (IPR011913 RfaE bifunctional protein, domain I) Apr 2008
Automated Process Approved IPR011914 (IPR011914 RfaE bifunctional protein, domain II) Apr 2008
Automated Process Approved IPR004821 (IPR004821 Cytidyltransferase-like domain) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR002173 (IPR002173 Carbohydrate/purine kinase, PfkB, conserved site) Apr 2008
Automated Process Approved IPR011611 (IPR011611 Carbohydrate kinase PfkB) Apr 2008
Automated Process Approved IPR004820 (IPR004820 (DEPRECATED) Cytidylyltransferase) Apr 2008
Automated Process Approved IPR029056 (IPR029056 Ribokinase-like) Jul 2018
Automated Process Approved PF01467 (PF01467 Cytidylyltransferase-like) Jul 2018
Automated Process Approved PF00294 (PF00294 pfkB family carbohydrate kinase) Jul 2018
Automated Process Uncurated GH28 (GH28 Glycoside Hydrolase Family 28) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Oct 2006
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011913
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Oct 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011913
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011913
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name hldE Published Annotation - PubMed ID: 11751812
Reference: Escherichia coli K-12
Jan 2019
Person Approved synonym rfaE Experimental - PubMed ID: 10629197
Reference: Escherichia coli
Aug 2002
Person Approved synonym ECK3042 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yqiF Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved synonym waaE Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved synonym gmhC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved synonym JW3024 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3052 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Apr 2007
Automated Process Approved alternate product name fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0010015: Trusted threshold=1326.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001116
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR004821 Cytidyltransferase-like domain Protein Sequence Similarity - InterPro Domain: IPR004821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR011914 RfaE bifunctional protein, domain II Protein Sequence Similarity - InterPro Domain: IPR011914
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR011913 RfaE bifunctional protein, domain I Protein Sequence Similarity - InterPro Domain: IPR011913
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated protein family GH28 Glycoside Hydrolase Family 28 Protein Sequence Similarity - CAZy Model Name: GH28
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR029056 Ribokinase-like Protein Sequence Similarity - InterPro Domain: IPR029056
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR004820 (DEPRECATED) Cytidylyltransferase Protein Sequence Similarity - InterPro Domain: IPR004820
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR002173 Carbohydrate/purine kinase, PfkB, conserved site Protein Sequence Similarity - InterPro Domain: IPR002173
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF01467 Cytidylyltransferase-like Protein Sequence Similarity - PFAM Model Name: PF01467
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00294 pfkB family carbohydrate kinase Protein Sequence Similarity - PFAM Model Name: PF00294
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR011611 Carbohydrate kinase PfkB Protein Sequence Similarity - InterPro Domain: IPR011611
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P76658 Feb 2006
Person Approved EC number 2.7.7.- Published Annotation - Swiss-Prot Accession Number: P76658 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.3.2 (metabolism; macromolecules (cellular constituent) biosynthesis; lipopolysaccharide; core region) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0010015 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76658 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P76658 Published Annotation - Swiss-Prot Accession Number: P76658 Jan 2006
Automated Process Approved db xref EcoGene:EG13416 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947548 Published Annotation - Entrez Gene Database ID: 947548
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1789432 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Uncurated function bifunctional protein catalysing steps in LPS core prescursor synthesis Experimental - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2006
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009244 - lipopolysaccharide core region biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC76088.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Oct 2006
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011913
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Oct 2006
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0016773 phosphotransferase activity, alcohol group as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011913
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004821
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016779 nucleotidyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011913
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001116 hldE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002034 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000471 rfaE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000248 hldE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000242 rfaE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001153 hldE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003271 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129330 yb3052 CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104167 rfaE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000671 rfaE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003589 rfaE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000705 hldE CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004624 hldE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005328 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014834 hldE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003429 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004632 rfaE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305585 hldE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000513 rfaE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000462 hldE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002446 hldE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005706 hldE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003171 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008064 hldE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003136 rfaE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001127 rfaE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006091 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005518 hldE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009270 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079971 rfaE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003515 rfaE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004115 rfaE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005605 hldE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005590 hldE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003565 rfaE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007949 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000323 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007703 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006220 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008479 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005622 hldE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009199 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005966 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007004 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005984 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006499 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005807 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005390 hldE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006235 hldE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028079 rfaE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007571 hldE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007912 hldE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003577 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002849 rfaE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003121 rfaE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003700 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003309 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003483 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003516 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177690 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003394 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003342 hldE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133992 rfaE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005892 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003497 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003210 rfaE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001354 rfaE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003465 rfaE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001772 rfaE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005328 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002572 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002845 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002679 hldE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001338 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003476 hldE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000723 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011124 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000222 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290466 rfaE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006416 rfaE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063898 rfaE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002048 rfaE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002099 rfaE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004022 rfaE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008571 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145863 rfaE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005061 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007553 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004650 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003676 rfaE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007807 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009919 rfaE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009384 rfaE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007300 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007813 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006772 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005772 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006235 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006943 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007818 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005254 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003100 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003067 rfaE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004011 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007972 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007101 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007461 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007382 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112149 rfaE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084839 rfaE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003882 rfaE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099951 rfaE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006029 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006110 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004666 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001604 rfaE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267387 rfaE CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003194 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008900 hldE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004042 hldE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003687 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074485 rfaE CDS
Person Approved Go view Shigella flexneri 301 ABT-0089338 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003295 CDS
Person Approved Go view Shigella sonnei 046 ADD-0003482 rfaE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007330 rfaE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000277 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010537 rfaE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001975 rfaE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003784 rfaE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001449 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241442 rfaE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004397 hldE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003756 rfaE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006074 hldE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002670 rfaE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117500 rfaE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005049 hldE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005189 hldE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004147 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009320 hldE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006360 hldE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033298 rfaE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004369 hldE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000635 rfaE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000512 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004646 hldE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004506 hldE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003517 rfaE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004238 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000753 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007011 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002627 rfaE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3190320 to 3201753
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010003yqiHCDSforward31898813190630Downstream
ABE-0010005yqiICDSforward31906323191696Downstream
ABE-0010007glgSCDScomplement31917393191939Downstream
ABE-0010011yqiJCDSforward31922083192837Downstream
ABE-0010013yqiKCDSforward31928643194525Downstream
ABE-0047267sibDncRNAcomplement31947213194865Downstream
ABE-0285208ibsDCDSforward31947663194825Downstream
ABE-0285193sibEncRNAcomplement31950973195240Downstream
ABE-0285210ibsECDSforward31951413195200Downstream
ABE-0010015hldECDScomplement31953203196753Matches
ABE-0010018glnECDScomplement31968013199641Upstream
ABE-0010020ygiFCDScomplement31996643200965Upstream
ABE-0010028ygiMCDSforward32012073201827Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.