Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010034 (bacA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010034 showshow history
Names
bacA uppP JW3029 ECK3047 b3057
Product
undecaprenyl pyrophosphate phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3203310 3204131 822 274
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001121
EnteroFam0010034: Trusted threshold=733; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR003824 (IPR003824 Undecaprenyl-diphosphatase UppP) Apr 2008
Automated Process Approved PF02673 (PF02673 Bacitracin resistance protein BacA) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0042493 response to drug GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Oct 2006
Automated Process Uncurated GO biological process GO:0016311 dephosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003824
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003824
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Uncurated GO molecular function GO:0050380 undecaprenyl-diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003824
Reference: Escherichia coli K-12 MG1655
Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name bacA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym ECK3047 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym uppP Published Annotation - PubMed ID: 15138271
Reference: Escherichia coli K-12 BW25113
Oct 2006
Person Approved synonym JW3029 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3057 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product undecaprenyl pyrophosphate phosphatase Experimental - PubMed ID: 15138271
Reference: Escherichia coli K-12 BW25113
Oct 2006
Person Approved alternate product name bacitracin resistance protein Experimental - PubMed ID: 8389741
Reference: Escherichia coli JM83
Oct 2006
Protein Family
Person Approved EnteroFam EnteroFam0010034: Trusted threshold=733; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001121
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR003824 Undecaprenyl-diphosphatase UppP Protein Sequence Similarity - InterPro Domain: IPR003824
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF02673 Bacitracin resistance protein BacA Protein Sequence Similarity - PFAM Model Name: PF02673
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved EC number 3.6.1.27 Published Annotation - Swiss-Prot Accession Number: P60932 Feb 2006
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11665 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0010034 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947551 Published Annotation - Entrez Gene Database ID: 947551
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P60932 Published Annotation - Swiss-Prot Accession Number: P60932 Jan 2006
Automated Process Approved db xref GI:1789437 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P60932 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function putative transport; Drug/analog sensitivity Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note bacitracin resistance; possibly phosphorylates undecaprenol; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC76093.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0042493 response to drug GO Inferred from Electronic Annotation - Database Name:Identifier: GO:MultiFun2GO
Reference: Escherichia coli K-12 MG1655
Oct 2006
Automated Process Uncurated GO biological process GO:0016311 dephosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003824
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003824
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0050380 undecaprenyl-diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003824
Reference: Escherichia coli K-12 MG1655
Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001121 bacA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002038 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000514 bacA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001502 bacA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001912 bacA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001786 bacA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003266 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129332 bacA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104784 bacA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104169 bacA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000660 uppP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003594 uppP CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000700 uppP CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004629 uppP CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005322 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014828 bacA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003434 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004627 uppP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305600 uppP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000508 bacA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000457 uppP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002441 bacA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005700 bacA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003177 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008059 bacA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003141 uppP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001122 uppP CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006085 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005512 bacA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009265 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079978 bacA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003520 uppP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004120 uppP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005599 bacA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005595 bacA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003570 bacA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007954 uppP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000328 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007709 bacA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006226 bacA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008484 bacA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010783 bacA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009205 bacA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005960 bacA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007010 bacA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005990 bacA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006505 bacA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005812 bacA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005396 bacA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006241 bacA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028084 bacA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007565 uppP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007918 uppP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003583 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002854 bacA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003126 bacA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003694 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003303 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003477 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003523 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177696 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003399 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003348 bacA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133997 bacA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005898 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003502 bacA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003215 uppP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001344 uppP CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003470 uppP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001777 uppP CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005322 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002577 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002850 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002684 uppP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001333 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003481 uppP CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000718 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011129 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000227 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290461 bacA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006421 bacA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063903 bacA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002059 bacA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002102 bacA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004027 bacA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008577 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145873 bacA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003191 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007558 bacA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004643 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003682 bacA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007812 bacA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009937 bacA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009402 bacA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007295 bacA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007818 bacA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006777 bacA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005777 bacA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006240 bacA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006948 bacA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007823 bacA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005249 bacA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003105 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003072 bacA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004016 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007977 bacA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007094 bacA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007466 bacA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007387 bacA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112160 bacA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084844 bacA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003887 uppP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099964 bacA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006024 bacA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006105 bacA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004661 bacA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001599 uppP CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267922 CDS
Person Approved Go view Shigella boydii 227 ADV-0003199 bacA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008905 bacA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004047 bacA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074490 bacA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089343 bacA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003300 bacA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003487 bacA CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135983 bacA CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000709 bacA pseudogene
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000271 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010552 bacA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001970 bacA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002310 bacA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001454 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241427 bacA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004402 uppP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003762 bacA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006069 uppP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002675 bacA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117483 bacA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005054 uppP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005194 uppP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003233 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009325 uppP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006365 uppP CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033304 bacA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004364 uppP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000629 bacA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000506 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004641 uppP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004501 uppP CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003522 bacA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004245 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000747 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006980 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002632 uppP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21014mutantTn5 InsertionRequest the StrainABE-0010034bacAbacA::Tn5KAN-I-SceI at position 502 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3198310 to 3209131
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010018glnECDScomplement31968013199641Downstream
ABE-0010020ygiFCDScomplement31996643200965Downstream
ABE-0010028ygiMCDSforward32012073201827Downstream
ABE-0010031ccaCDSforward32018913203129Downstream
ABE-0285573repeat_regionforward32031443203268Downstream
ABE-0010034bacACDScomplement32033103204131Matches
ABE-0010036folBCDScomplement32042213204589Upstream
ABE-0010042plsYCDSforward32046943205311Upstream
ABE-0010045ttdRCDScomplement32053243206256Upstream
ABE-0010050ttdACDSforward32064633207374Upstream
ABE-0010052ttdBCDSforward32073713207976Upstream
ABE-0010056ttdTCDSforward32080243209487Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.