Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010036 (folB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010036 showshow history
Names
folB ygiG JW3030 ECK3048 b3058
Product
bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3204221 3204589 369 123
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001122
EnteroFam0010036: Trusted threshold=309.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006157 (IPR006157 Dihydroneopterin aldolase/epimerase domain) Apr 2008
Automated Process Approved IPR006156 (IPR006156 Dihydroneopterin aldolase) Apr 2008
Automated Process Approved PF02152 (PF02152 Dihydroneopterin aldolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006760 folic acid-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006157
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004150 dihydroneopterin aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006157
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name folB Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3048 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ygiG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW3030 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3058 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Apr 2007
Protein Family
Person Approved EnteroFam EnteroFam0010036: Trusted threshold=309.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001122
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006156 Dihydroneopterin aldolase Protein Sequence Similarity - InterPro Domain: IPR006156
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006157 Dihydroneopterin aldolase/epimerase domain Protein Sequence Similarity - InterPro Domain: IPR006157
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02152 Dihydroneopterin aldolase Protein Sequence Similarity - PFAM Model Name: PF02152
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.1.2.25 Published Annotation - Swiss-Prot Accession Number: P0AC16 Feb 2006
Person Uncurated MultiFun 1.5.3.2 (metabolism; building block biosynthesis; cofactor, small molecule carrier; folic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11673 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010036 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947544 Published Annotation - Entrez Gene Database ID: 947544
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87082204 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC16 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AC16 Published Annotation - Swiss-Prot Accession Number: P0AC16 Jan 2006
Automated Process Approved note putative kinase; GO_process: GO:0046656 - folic acid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76094.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006760 folic acid-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006157
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004150 dihydroneopterin aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006157
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001122 folB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001884 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000513 folB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000650 folB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000788 folB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000975 folB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003264 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000659 folB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003595 folB CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000699 folB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004630 folB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005321 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014827 folB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003435 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004626 folB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305603 folB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000456 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002440 folB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005699 folB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003178 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008058 folB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003142 folB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001121 folB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006084 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005511 folB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009264 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079979 folB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003521 folB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004121 folB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005598 folB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005596 folB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003571 folB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007955 folB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000329 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007710 folB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006227 folB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008485 folB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010782 folB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009206 folB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005959 folB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007011 folB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005991 folB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006506 folB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005813 folB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005397 folB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006242 folB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028085 folB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007564 folB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007919 folB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003584 folB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002855 folB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003127 folB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003693 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003302 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003476 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003524 folB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003400 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003349 folB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133998 folB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005899 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003503 ygiG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003216 folB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001343 folB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003471 ygiG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001778 folB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005321 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002579 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002852 folB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002685 folB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001332 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003482 folB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000717 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011130 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000228 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290460 folB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006422 folB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0063904 folB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002058 folB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002103 folB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004028 folB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008578 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145875 folB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000545 folB-1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007559 folB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004642 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003683 folB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007813 folB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009940 folB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009405 folB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007294 folB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007819 folB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006778 folB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005778 folB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006241 folB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006949 folB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007824 folB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005248 folB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003106 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003073 folB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004017 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007978 folB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007093 folB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007467 folB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007388 folB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112161 folB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084845 folB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003888 folB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099967 folB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006023 folB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006104 folB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004660 folB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001598 folB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264857 folB CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003200 ygiG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008906 folB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004048 folB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003693 ygiG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074491 folB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089344 ygiG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003301 ygiG CDS
Person Approved Go view Shigella sonnei 046 ADD-0003488 folB CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0000275 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000573 VC0524 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135982 ygiG CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000653 folB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007343 folB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000270 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010557 folB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001969 folB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002309 folB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001455 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241426 folB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004403 folB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003763 folB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006068 folB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002676 folB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117481 folB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005055 folB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005195 folB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003234 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009326 folB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006366 folB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033305 folB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004363 folB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000628 folB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000505 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004640 folB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004500 folB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003523 folB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004246 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000746 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006976 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002633 folB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3199221 to 3209589
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010018glnECDScomplement31968013199641Downstream
ABE-0010020ygiFCDScomplement31996643200965Downstream
ABE-0010028ygiMCDSforward32012073201827Downstream
ABE-0010031ccaCDSforward32018913203129Downstream
ABE-0285573repeat_regionforward32031443203268Downstream
ABE-0010034bacACDScomplement32033103204131Downstream
ABE-0010036folBCDScomplement32042213204589Matches
ABE-0010042plsYCDSforward32046943205311Upstream
ABE-0010045ttdRCDScomplement32053243206256Upstream
ABE-0010050ttdACDSforward32064633207374Upstream
ABE-0010052ttdBCDSforward32073713207976Upstream
ABE-0010056ttdTCDSforward32080243209487Upstream
ABE-0285574repeat_regionforward32094993209518Upstream
ABE-0010058tsaDCDScomplement32095303210543Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.