Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010092 (patA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010092 showshow history
Names
patA JW5510 ECK3063 ygjG b3073
Product
putrescine aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3219494 3220873 1380 460
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005814 (IPR005814 Aminotransferase class-III) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR010164 (IPR010164 Ornithine aminotransferase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR017747 (IPR017747 Putrescine aminotransferase) Jul 2018
Automated Process Approved PF00202 (PF00202 Aminotransferase class-III) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0009447 putrescine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017747
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0033094 butane-1,4-diamine:2-oxoglutarate aminotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017747
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name patA Published Annotation - PubMed ID: 22636776
Reference: Escherichia coli K-12 W3110 		Sep 2018
Person Approved synonym ECK3063 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5510 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ygjG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b3073 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putrescine aminotransferase Experimental - PubMed ID: 22636776
Reference: Escherichia coli K-12 W3110 		Sep 2018
Person Approved alternate product name putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name probable ornithine aminotransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative acetylornithine aminotransferase, PLP-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR010164 Ornithine aminotransferase Protein Sequence Similarity - InterPro Domain: IPR010164
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00202 Aminotransferase class-III Protein Sequence Similarity - PFAM Model Name: PF00202
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017747 Putrescine aminotransferase Protein Sequence Similarity - InterPro Domain: IPR017747
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005814 Aminotransferase class-III Protein Sequence Similarity - InterPro Domain: IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 2.6.1.- Published Annotation - Database Name: EC2GO: GO:0008483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.6.1.13 Published Annotation - Swiss-Prot Accession Number: P42588 Feb 2006
Automated Process Uncurated EC number 2.6.1.82 Published Annotation - Database Name: EC2GO: GO:0033094
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved EC number 2.6.1.29 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 1.5.3.6 (metabolism; building block biosynthesis; cofactor, small molecule carrier; pyridoxine (vitamin B6)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated comment The coordinates of ygjG have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted in EcoGene (EG12718), removing 9 codons from the N-terminus. Published Annotation in EcoGene - EG Number: EG12718
Reference: Escherichia coli K-12 MG1655 		Apr 2007
Person Approved db xref UniProtKB:P42588 Published Annotation - Swiss-Prot Accession Number: P42588 Jan 2005
Automated Process Approved db xref EcoGene:EG12718 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010092 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947120 Published Annotation - Entrez Gene Database ID: 947120
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:145693181 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P42588 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Amino acid biosynthesis: Arginine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note probable ornithine aminotransferase; GO_process: GO:0006526 - arginine biosynthetic process; GO_process: GO:0008615 - pyridoxine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76108.3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0009447 putrescine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017747
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0033094 butane-1,4-diamine:2-oxoglutarate aminotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017747
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001940 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002601 patA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002692 patA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004728 patA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002619 patA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003751 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004217 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003792 ygjG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003654 ygjG CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000664 patA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004706 patA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007609 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018619 patA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002686 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004551 ygjG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002378 ygjG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009168 ygjG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003193 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008040 rocD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003155 ygjG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001106 ygjG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006069 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007228 ygjG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007086 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080000 patA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003537 ygjG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004161 ygjG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005579 ygjG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005613 ygjG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003587 ygjG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007974 rocD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000346 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007727 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006244 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007775 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007457 ygjG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009223 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005942 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007029 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006009 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008913 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007607 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005415 ygjG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006260 ygjG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028100 ygjG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007320 patA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007938 ygjG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003598 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002869 ygjG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003142 ygjG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003714 ygjG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003284 ygjG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003458 ygjG CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003543 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177711 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003417 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003365 ygjG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134013 ygjG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005917 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003520 ygjG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002016 ygjG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003548 ygjG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001809 ygjG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005902 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061796 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000894 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000402 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001818 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006172 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007572 ygjG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004624 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003698 oat CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007826 rocD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009987 oat CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009450 oat CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007239 ygjG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007872 ygjG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006792 ygjG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005791 ygjG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006254 ygjG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006966 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007837 ygjG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005235 ygjG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003119 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003085 oat CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004032 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007992 ygjG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008339 ygjG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007480 ygjG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007152 ygjG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112189 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084857 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003902 oat CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100006 oat CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006010 ygjG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006091 ygjG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004647 rocD CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003220 ygjG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004065 ygjG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074511 ygjG CDS
Person Approved Go view Shigella flexneri 301 ABT-0256103 ygjG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003318 ygjG CDS
Person Approved Go view Shigella sonnei 046 ADD-0003505 ygjG CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006849 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002660 ygjG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22691mutantTn5 InsertionRequest the StrainABE-0010092patAygjG::Tn5KAN-I-SceI at position 152 in Minus orientation ,+ pKD460Blattner Laboratory
FB23285mutantTn5 InsertionRequest the StrainABE-0010092patAygjG::Tn5KAN-I-SceI at position 152 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3214494 to 3225873
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010070rpoDCDSforward32130473214888Upstream
ABE-0285575repeat_regionforward32148923214924Upstream
ABE-0010073mugCDScomplement32149673215473Upstream
ABE-0010076ileXtRNAforward32155983215673Upstream
ABE-0010079nfeFCDScomplement32157273216491Upstream
ABE-0285576repeat_regionforward32166013216678Upstream
ABE-0010084nfeRCDSforward32167793217402Upstream
ABE-0285577repeat_regionforward32174343217522Upstream
ABE-0010087aerCDScomplement32175563219076Upstream
ABE-0010092patACDSforward32194943220873Matches
ABE-0285578repeat_regionforward32208803220910Downstream
ABE-0010094ygjHCDScomplement32209153221247Downstream
ABE-0010099ebgRCDSforward32214663222449Downstream
ABE-0010104ebgACDSforward32226333225725Downstream
ABE-0010106ebgCCDSforward32257223226171Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.