Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010159 (sstT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010159 showshow history
Names
sstT ygjU JW3060 ECK3080 b3089
Product
sodium:serine/threonine symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3239944 3241188 1245 415
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001991 (IPR001991 Sodium:dicarboxylate symporter) Apr 2008
Automated Process Approved IPR036458 (IPR036458 Sodium:dicarboxylate symporter superfamily) Jul 2018
Automated Process Approved PF00375 (PF00375 Sodium:dicarboxylate symporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006835 dicarboxylic acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009088 threonine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0015293 symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017153 sodium:dicarboxylate symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name sstT Published Sequence Analysis - PubMed ID: 9852024
Reference: Escherichia coli K-12 W3133 		Jul 2006
Person Approved synonym ECK3080 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ygjU Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW3060 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3089 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product sodium:serine/threonine symporter Experimental - PubMed ID: 12097162
Reference: Escherichia coli K-12 W3133 		Jul 2006
Protein Family
Automated Process Approved protein family PF00375 Sodium:dicarboxylate symporter family Protein Sequence Similarity - PFAM Model Name: PF00375
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036458 Sodium:dicarboxylate symporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001991 Sodium:dicarboxylate symporter Protein Sequence Similarity - InterPro Domain: IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.5.1.11 (metabolism; building block biosynthesis; amino acids; serine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.8 (metabolism; building block biosynthesis; amino acids; threonine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.23 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.140 (transport; substrate; Na+/serine/threonine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12732 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010159 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGE4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGE4 Published Annotation - Swiss-Prot Accession Number: P0AGE4 Jan 2006
Automated Process Approved db xref GeneID:947605 Published Annotation - Entrez Gene Database ID: 947605
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789473 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006564 - L-serine biosynthetic process; GO_process: GO:0009088 - threonine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76124.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006564 L-serine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006835 dicarboxylic acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009088 threonine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0015293 symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001991, IPR036458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0017153 sodium:dicarboxylate symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002652 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001682 sstT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001983 sstT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001852 sstT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002022 sstT CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000145 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004211 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000605 sstT CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003667 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000657 sstT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004720 sstT CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004521 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0297560 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003315 sstT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003006 ygjU CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002348 sstT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008021 sstT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003210 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008022 ygjU CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003168 ygjU CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001092 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006049 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007245 sstT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007069 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080019 sstT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003553 sstT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004178 sstT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005562 sstT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005630 sstT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003605 sstT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007991 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000363 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007744 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006261 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007792 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007440 sstT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009240 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005925 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007046 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006026 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008930 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007624 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005432 sstT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006277 sstT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028116 sstT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007302 sstT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007956 sstT CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002885 sstT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003159 sstT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003731 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003440 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003433 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003379 sstT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134029 sstT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005934 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003536 ygjU CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004080 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003564 ygjU CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001825 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002612 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003131 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011220 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000254 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006482 ygjU CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060875 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000356 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000167 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000966 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005082 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145922 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007580 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004616 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003706 ygjU CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007833 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010007 ygjU CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007232 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007879 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006799 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005798 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006262 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006974 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007844 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005228 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003127 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003093 ygjU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004042 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007999 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008331 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007487 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007159 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112201 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0084864 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003912 ygjU CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100027 sstT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006003 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006084 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004640 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001531 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266732 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003239 ygjU CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008942 sstT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006361 sstT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003729 ygjU CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074529 sstT CDS
Person Approved Go view Shigella flexneri 301 ABT-0089371 ygjU CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003334 ygjU CDS
Person Approved Go view Shigella sonnei 046 ADD-0003543 ygjU CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002925 VCA0036 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007450 sstT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002614 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010635 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0004002 sstT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003672 sstT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003718 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241292 sstT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005205 sstT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003836 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006006 sstT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002736 sstT CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117307 sstT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005117 sstT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008655 sstT CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003967 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007077 sstT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007686 sstT CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033370 sstT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007993 sstT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000562 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000433 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004577 sstT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004436 sstT CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003585 sstT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004360 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000652 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006749 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002688 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22757mutantTn5 InsertionRequest the StrainABE-0010159sstTygjU::Tn5KAN-I-SceI at position 378 in Plus orientation ,+ pKD460Blattner Laboratory
FB23290mutantTn5 InsertionRequest the StrainABE-0010159sstTygjU::Tn5KAN-I-SceI at position 378 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3234944 to 3246188
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010133rlmGCDScomplement32347393235875Upstream
ABE-0010138ygjPCDSforward32359603236463Upstream
ABE-0010142ygjQCDSforward32365403237232Upstream
ABE-0010148ygjRCDSforward32373113238297Upstream
ABE-0010151alxCDSforward32385803239545Upstream
ABE-0010159sstTCDSforward32399443241188Matches
ABE-0010161ygjVCDScomplement32411933241744Downstream
ABE-0010164uxaACDScomplement32418273243314Downstream
ABE-0010167uxaCCDScomplement32433293244741Downstream
ABE-0010171exuTCDSforward32452243246522Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.