Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010164 (uxaA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010164 showshow history
Names
uxaA ygjW JW3062 ECK3082 b3091
Product
altronate hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3241827 3243314 1488 496
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007392 (IPR007392 D-galactarate/Altronate dehydratase, C-terminal) Apr 2008
Automated Process Approved IPR013974 (IPR013974 SAF domain) Apr 2008
Automated Process Approved PF08666 (PF08666 SAF domain) Jul 2018
Automated Process Approved PF04295 (PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007392
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007392
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name uxaA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3062 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ygjW Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3082 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3091 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product altronate hydrolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name altronate hydrolase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR007392 D-galactarate/Altronate dehydratase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR007392
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Protein Sequence Similarity - PFAM Model Name: PF04295
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013974 SAF domain Protein Sequence Similarity - InterPro Domain: IPR013974
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08666 SAF domain Protein Sequence Similarity - PFAM Model Name: PF08666
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 4.-.-.- Published Annotation - Database Name: EC2GO: GO:0016829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 4.2.1.7 Published Annotation - Swiss-Prot Accession Number: P42604 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010164 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P42604 Published Annotation - Swiss-Prot Accession Number: P42604 Jan 2005
Automated Process Approved db xref GeneID:947603 Published Annotation - Entrez Gene Database ID: 947603
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789475 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P42604 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12734 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76126.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR007392
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016836 hydro-lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007392
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000330 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002390 uxaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002123 uxaA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001278 uxaA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002548 uxaA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000146 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003492 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000603 uxaA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003668 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000655 uxaA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004722 uxaA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008597 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0018699 uxaA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000583 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004520 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002346 uxaA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008023 uxaA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003212 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008020 uxaA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003170 uxaA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001090 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006047 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007247 uxaA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007067 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080021 uxaA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003555 uxaA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004180 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005560 uxaA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005632 uxaA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003607 uxaA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007993 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000365 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007746 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006263 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007794 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007438 uxaA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009242 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005923 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007048 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006028 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008932 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007626 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005434 uxaA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006279 uxaA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028118 uxaA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007300 uxaA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007958 uxaA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003616 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002887 uxaA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003161 uxaA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003733 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003438 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003564 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177728 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003435 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003381 uxaA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134031 uxaA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005936 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003538 uxaA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000125 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001383 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003566 uxaA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001826 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008387 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002613 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003130 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002743 uxaA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001260 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003553 uxaA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000602 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011221 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000255 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290329 uxaA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006484 uxaA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060871 uxaA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000346 uxaA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001349 uxaA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000964 uxaA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005080 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001530 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008944 uxaA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006363 uxaA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003731 uxaA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074531 uxaA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089373 uxaA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003336 uxaA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003545 uxaA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001972 uxaA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002612 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010645 uxaA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0004004 uxaA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003670 uxaA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000271 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241281 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005208 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003839 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006003 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002739 uxaA CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117297 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005120 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008658 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007080 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007689 uxaA CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033374 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007990 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000559 uxaA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000430 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004574 uxaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004434 uxaA CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003587 uxaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004362 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000650 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006745 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002689 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21023mutantTn5 InsertionRequest the StrainABE-0010164uxaAuxaA::Tn5KAN-I-SceI at position 921 in Plus orientation ,- pKD46 Insertion site is approximate5Blattner Laboratory
FB21024mutantTn5 InsertionRequest the StrainABE-0010164uxaAuxaA::Tn5KAN-I-SceI at position 921 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3236827 to 3248314
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010142ygjQCDSforward32365403237232Downstream
ABE-0010148ygjRCDSforward32373113238297Downstream
ABE-0010151alxCDSforward32385803239545Downstream
ABE-0010159sstTCDSforward32399443241188Downstream
ABE-0010161ygjVCDScomplement32411933241744Downstream
ABE-0010164uxaACDScomplement32418273243314Matches
ABE-0010167uxaCCDScomplement32433293244741Upstream
ABE-0010171exuTCDSforward32452243246522Upstream
ABE-0010176exuRCDSforward32466523247428Upstream
ABE-0285805yqiMCDSforward32476683247751Upstream
ABE-0010181yqjACDSforward32477733248435Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.