Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010167 (uxaC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010167 showshow history
Names
uxaC ygjY ygjZ ygjX JW3063 ECK3083 b3092
Product
uronate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3243329 3244741 1413 471
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001130
EnteroFam0010167: Trusted threshold=1259; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003766 (IPR003766 Uronate isomerase) Apr 2008
Automated Process Approved IPR032466 (IPR032466 Metal-dependent hydrolase) Jul 2018
Automated Process Approved PF02614 (PF02614 Glucuronate isomerase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006064 glucuronate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008880 glucuronate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name uxaC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3063 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ygjY Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym ygjZ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3083 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ygjX Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b3092 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Automated Process Approved product uronate isomerase Experimental - PubMed ID: 3029026 Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0010167: Trusted threshold=1259; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001130
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003766 Uronate isomerase Protein Sequence Similarity - InterPro Domain: IPR003766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR032466 Metal-dependent hydrolase Protein Sequence Similarity - InterPro Domain: IPR032466
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02614 Glucuronate isomerase Protein Sequence Similarity - PFAM Model Name: PF02614
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 5.3.1.12 Published Annotation - Swiss-Prot Accession Number: P0A8G3 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12737 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:2367192 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A8G3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A8G3 Published Annotation - Swiss-Prot Accession Number: P0A8G3 Jan 2006
Automated Process Approved db xref ASAP:ABE-0010167 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947599 Published Annotation - Entrez Gene Database ID: 947599
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76127.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006064 glucuronate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008880 glucuronate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003766
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001130 uxaC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000101 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001638 uxaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001764 uxaC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001279 uxaC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001951 uxaC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000306 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0004208 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000602 uxaC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003669 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000654 uxaC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004723 uxaC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008599 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018697 uxaC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000581 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004519 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002345 uxaC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008024 uxaC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003213 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008019 uxaC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003171 uxaC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001089 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006046 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007248 uxaC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007066 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080022 uxaC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003556 uxaC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004181 uxaC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005559 uxaC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005633 uxaC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003608 uxaC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007994 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002769 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007747 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006264 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007795 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007437 uxaC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009243 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005922 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007049 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006029 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008933 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007627 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005435 uxaC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006280 uxaC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028119 uxaC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007299 uxaC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007959 uxaC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003617 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002888 uxaC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003162 uxaC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003734 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003437 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003565 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177729 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003436 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003382 uxaC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134032 uxaC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005937 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003539 uxaC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000124 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001385 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003567 uxaC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001827 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008389 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002615 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003128 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002745 uxaC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001258 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003555 uxaC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000600 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011223 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000257 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290327 uxaC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006486 uxaC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060869 uxaC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000348 uxaC CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001347 uxaC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000962 uxaC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005078 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137183 uxaC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007476 uxaC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004713 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003600 uxaC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007734 uxaC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009721 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009196 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007369 uxaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007742 uxaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006703 uxaC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005701 uxaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006164 uxaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006863 uxaC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007747 uxaC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005325 uxaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003037 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003004 uxaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003932 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007901 uxaC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007169 uxaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007390 uxaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007311 uxaC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112036 uxaC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084777 uxaC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003803 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099774 uxaC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006099 uxaC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006186 uxaC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004735 uxaC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001529 CDS
Person Approved Go view Shigella boydii 227 ADV-0003242 uxaC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008945 uxaC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006364 uxaC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074532 uxaC CDS
Person Approved Go view Shigella flexneri 301 ABT-0089374 uxaC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003337 uxaC CDS
Person Approved Go view Shigella sonnei 046 ADD-0003546 uxaC CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0001973 uxaC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002610 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010650 uxaC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0004006 uxaC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003668 uxaC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000269 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241279 uxaC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005210 uxaC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003842 uxaC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006001 uxaC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002741 uxaC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117294 uxaC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005122 uxaC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008660 uxaC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001367 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007082 uxaC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007691 uxaC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033376 uxaC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007988 uxaC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000557 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000428 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004571 uxaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004432 uxaC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003589 uxaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004364 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000648 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006743 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002690 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22333mutantTn5 InsertionRequest the StrainABE-0010167uxaCuxaC::Tn5KAN-I-SceI at position in Minus orientation, + pkD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3238329 to 3249741
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010151alxCDSforward32385803239545Downstream
ABE-0010159sstTCDSforward32399443241188Downstream
ABE-0010161ygjVCDScomplement32411933241744Downstream
ABE-0010164uxaACDScomplement32418273243314Downstream
ABE-0010167uxaCCDScomplement32433293244741Matches
ABE-0010171exuTCDSforward32452243246522Upstream
ABE-0010176exuRCDSforward32466523247428Upstream
ABE-0285805yqiMCDSforward32476683247751Upstream
ABE-0010181yqjACDSforward32477733248435Upstream
ABE-0010183mzrACDSforward32484393248822Upstream
ABE-0010188yqjCCDSforward32489693249337Upstream
ABE-0010192yqjDCDSforward32493753249680Upstream
ABE-0010195yqjECDSforward32496833250087Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.