Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010273 (garR) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010273 showshow history
Names
garR JW5526 ECK3113 yhaE b3125
Product
tartronate semialdehyde reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3271867 3272751 885 295
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002204 (IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site) Apr 2008
Automated Process Approved IPR006398 (IPR006398 2-hydroxy-3-oxopropionate reductase) Apr 2008
Automated Process Approved IPR006115 (IPR006115 6-phosphogluconate dehydrogenase, NADP-binding) Apr 2008
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR006183 (IPR006183 6-phosphogluconate dehydrogenase) Apr 2008
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Apr 2008
Automated Process Approved IPR029154 (IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF14833 (PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase) Jul 2018
Automated Process Approved PF03446 (PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006398, IPR008927
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO biological process GO:0046487 glyoxylate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO biological process GO:0006573 valine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0009441 glycolate metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR029154
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006115
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008442 3-hydroxyisobutyrate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008679 2-hydroxy-3-oxopropionate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name garR Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym yhaE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym JW5526 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3113 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3125 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product tartronate semialdehyde reductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name tartronate semialdehyde reductase (TSAR) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR006398 2-hydroxy-3-oxopropionate reductase Protein Sequence Similarity - InterPro Domain: IPR006398
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site Protein Sequence Similarity - InterPro Domain: IPR002204
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Protein Sequence Similarity - InterPro Domain: IPR006115
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF14833
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF03446
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR029154
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR006183 6-phosphogluconate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR006183
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 1.1.1.60 Published Annotation - Swiss-Prot Accession Number: P0ABQ2 Feb 2006
Person Approved MultiFun 1.7.25 (metabolism; central intermediary metabolism; glycolate metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Uncurated comment The coordinates of garR have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted in EcoGene (EG11176), removing 2 codons from the N-terminus. Published Annotation in EcoGene - EG Number: EG11176
Reference: Escherichia coli K-12 MG1655
Apr 2007
Person Approved db xref UniProtKB:P0ABQ2 Published Annotation - Swiss-Prot Accession Number: P0ABQ2 Jan 2006
Automated Process Approved db xref GI:145693186 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947631 Published Annotation - Entrez Gene Database ID: 947631
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ABQ2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0010273 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11176 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 1.1.1 metabolism; carbon utilization; carbon compounds Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved function 1.7.25 metabolism; central intermediary metabolism; glycolate metabolism Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved note tartronate semialdehyde reductase (TSAR); GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009441 - glycolate metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC76159.3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved regulation expression regulated by dsrA; expression is reduced in strain overexpressing dsrA Experimental - PubMed ID: 15342588
Reference: Escherichia coli K-12 M182
Oct 2005
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0046487 glyoxylate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006398, IPR008927
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Approved GO biological process GO:0009441 glycolate metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006573 valine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Approved GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008442 3-hydroxyisobutyrate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006115
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Uncurated GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR029154
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008679 2-hydroxy-3-oxopropionate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001843 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002106 garR CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002274 garR CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003490 glxR CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002338 garR CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003280 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000583 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000628 garR_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004776 garR_3 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005341 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014855 garR CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003418 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004496 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002314 garR CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008057 garR CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003245 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007984 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003196 yhaE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001063 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006005 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007284 garR CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007031 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080052 garR CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003593 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004217 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005485 garR CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005669 garR CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003635 garR CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008035 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002800 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007777 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006294 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007825 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007406 garR CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009273 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005891 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007079 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006060 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008963 garR CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007657 garR CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005465 garR CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006311 garR CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028150 garR CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007268 garR_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007999 garR CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003643 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002915 garR CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003193 garR CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003771 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003694 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003405 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003593 garR CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177754 garR CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003472 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003418 garR CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134062 garR CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005968 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003565 yhaE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000349 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003584 garR CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001851 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005340 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002373 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002594 garR CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002407 garR CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001597 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003173 garR CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000981 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010838 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000828 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291107 garR CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006224 yhaE CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063887 garR CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002051 garR CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002096 garR CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004011 garR CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008559 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007605 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004582 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003733 garR CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007858 garR CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010070 garR CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009526 garR CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007207 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007905 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006825 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005821 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006288 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007000 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007867 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005202 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003150 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003116 garR CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004070 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008023 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007307 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007512 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007184 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112239 garR CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084888 garR CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003936 garR CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100097 garR CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005979 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006059 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004612 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266376 garR CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003281 yhaE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008646 garR CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006398 garR CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003782 yhaE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074572 yhaE CDS
Person Approved Go view Shigella flexneri 301 ABT-0089403 yhaE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003370 yhaE CDS
Person Approved Go view Shigella sonnei 046 ADD-0003584 garR CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002896 VCA0007 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001967 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002850 garR_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003018 garR_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003026 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0010273 garR lambda repressor assay Doodle - bnumber: b3125 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21857mutantTn5 InsertionRequest the StrainABE-0010273garRyhaE::Tn5KAN-I-SceI at position 762 in Minus orientation ,+ pKD460Blattner Laboratory
FB23001mutantTn5 InsertionRequest the StrainABE-0010273garRyhaE::Tn5KAN-I-SceI at position 762 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3266867 to 3277751
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010252tdcACDScomplement32661273267065Downstream
ABE-0010255tdcRCDSforward32673803267598Downstream
ABE-0010261yhaBCDSforward32678543268393Downstream
ABE-0010263yhaCCDSforward32684153269602Downstream
ABE-0285585repeat_regionforward32697223269819Downstream
ABE-0010269rnpBncRNAcomplement32702163270592Downstream
ABE-0010271garKCDScomplement32706253271770Downstream
ABE-0010273garRCDScomplement32718673272751Matches
ABE-0010276garLCDScomplement32727873273557Upstream
ABE-0010279garPCDScomplement32735733274907Upstream
ABE-0010284garDCDSforward32752823276853Upstream
ABE-0010287prlFCDSforward32770023277337Upstream
ABE-0010289yhaVCDSforward32773373277801Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.