Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010276 (garL) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010276 showshow history
Names
garL JW3095 ECK3114 yhaF b3126
Product
alpha-dehydro-beta-deoxy-D-glucarate aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3272787 3273557 771 257
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005000 (IPR005000 HpcH/HpaI aldolase/citrate lyase domain) Apr 2008
Automated Process Approved IPR015793 (IPR015793 Pyruvate kinase, barrel) Apr 2008
Automated Process Approved IPR017648 (IPR017648 5-keto-4-deoxy-D-glucarate aldolase) Jul 2018
Automated Process Approved IPR015813 (IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily) Jul 2018
Automated Process Approved PF03328 (PF03328 HpcH/HpaI aldolase/citrate lyase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0019394 glucarate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017648
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006725 cellular aromatic compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005000, IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008672 2-dehydro-3-deoxyglucarate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017648
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030955 potassium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016830 carbon-carbon lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004743 pyruvate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name garL Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym JW3095 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yhaF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3114 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3126 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product alpha-dehydro-beta-deoxy-D-glucarate aldolase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name alpha-dehydro-beta-deoxy-D-glucarate aldolase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017648 5-keto-4-deoxy-D-glucarate aldolase Protein Sequence Similarity - InterPro Domain: IPR017648
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005000 HpcH/HpaI aldolase/citrate lyase domain Protein Sequence Similarity - InterPro Domain: IPR005000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015793 Pyruvate kinase, barrel Protein Sequence Similarity - InterPro Domain: IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03328 HpcH/HpaI aldolase/citrate lyase family Protein Sequence Similarity - PFAM Model Name: PF03328
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.1.2.20 Published Annotation - Swiss-Prot Accession Number: P23522 Feb 2006
Person Approved MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010276 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10016 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789514 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23522 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947630 Published Annotation - Entrez Gene Database ID: 947630
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P23522 Published Annotation - Swiss-Prot Accession Number: P23522 Jan 2005
Automated Process Approved function 1.1.1 metabolism; carbon utilization; carbon compounds Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76160.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0019394 glucarate catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017648
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006725 cellular aromatic compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016830 carbon-carbon lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005000
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004743 pyruvate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005000, IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008672 2-dehydro-3-deoxyglucarate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017648
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030955 potassium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002032 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002566 garL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002609 garL CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004267 garL CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002451 garL CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003279 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000582 garL CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000627 garL CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004777 garL CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005340 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014854 garL CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003419 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004495 garL CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0002313 garL CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0008058 garL CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003246 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0007983 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003197 garL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001062 garL CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006004 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0007285 garL CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0007030 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080053 garL CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003594 garL CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004218 garL CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0005486 garL CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0005670 garL CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003636 garL CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008036 garL CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0002801 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0007778 garL CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0006295 garL CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0007826 garL CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0007405 garL CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009274 garL CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0005890 garL CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0007080 garL CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0006061 garL CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0008964 garL CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0007658 garL CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0005466 garL CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0006312 garL CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028151 garL CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007267 garL CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008000 garL CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003644 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0002916 garL CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003194 garL CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003772 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003695 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003404 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003594 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177755 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003473 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003419 garL CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134063 garL CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0005969 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003566 yhaF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003585 garL CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001852 garL CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005339 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002374 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002595 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002408 garL CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001596 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003174 garL CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000980 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010839 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000829 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0291108 garL CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006225 yhaF CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063888 garL CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002050 garL CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002097 garL CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004012 garL CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008560 CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0007606 garL CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0004581 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003734 garL CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0007859 garL CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0010073 garL CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0009529 garL CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0007206 garL CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0007906 garL CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0006826 garL CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0005822 garL CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0006289 garL CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0007001 garL CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0007868 garL CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0005201 garL CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0003151 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003117 garL CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0004071 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0008024 garL CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0007306 garL CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0007513 garL CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0007185 garL CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112241 garL CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084889 garL CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003937 garL CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100100 garL CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0005978 garL CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0006058 garL CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0004611 garL CDS
Person Approved Go view Shigella boydii 227 ADV-0003282 yhaF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008645 garL pseudogene
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0006399 garL CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003783 yhaF CDS
Person Approved Go view Shigella flexneri 301 ABT-0089404 yhaF pseudogene
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003371 garL pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0003585 garL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001966 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002849 hpaI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003017 hpaI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003025 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0010276 garL lambda repressor assay Doodle - bnumber: b3126 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3267787 to 3278557
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010261yhaBCDSforward32678543268393Downstream
ABE-0010263yhaCCDSforward32684153269602Downstream
ABE-0285585repeat_regionforward32697223269819Downstream
ABE-0010269rnpBncRNAcomplement32702163270592Downstream
ABE-0010271garKCDScomplement32706253271770Downstream
ABE-0010273garRCDScomplement32718673272751Downstream
ABE-0010276garLCDScomplement32727873273557Matches
ABE-0010279garPCDScomplement32735733274907Upstream
ABE-0010284garDCDSforward32752823276853Upstream
ABE-0010287prlFCDSforward32770023277337Upstream
ABE-0010289yhaVCDSforward32773373277801Upstream
ABE-0285586repeat_regionforward32778193277847Upstream
ABE-0010291agaRCDScomplement32778563278665Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.