Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010295 (kbaZ) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010295 showshow history
Names
kbaZ yhaX agaZ JW3101 ECK3120 b3132
Product
putative tagatose-1,6-bisphosphate aldolase 1 chaperone
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3278914 3280194 1281 427
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012062 (IPR012062 D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ-like) Apr 2008
Automated Process Approved PF08013 (PF08013 D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ-like) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0019402 galactitol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0009024 tagatose-6-phosphate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kbaZ Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3120 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yhaX Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3101 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym agaZ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved locus tag b3132 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative tagatose-1,6-bisphosphate aldolase 1 chaperone Published Annotation - EcoCyc Accession Number: G7631
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name putative tagatose 6-phosphate kinase 2 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name tagatose 6-phosphate aldolase 1, subunit together with AgaY Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name tagatose 6-phosphate aldolase 1, kbaZ subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF08013 D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ-like Protein Sequence Similarity - PFAM Model Name: PF08013
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012062 D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ-like Protein Sequence Similarity - InterPro Domain: IPR012062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.7.1.144 Published Annotation - Swiss-Prot Accession Number: P42903 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12763 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0C8K0 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010295 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P42903 Published Annotation - Swiss-Prot Accession Number: P42903 Jan 2005
Automated Process Approved db xref GI:1789520 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947637 Published Annotation - Entrez Gene Database ID: 947637
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative tagatose 6-phosphate kinase 2; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76166.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019402 galactitol metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0009024 tagatose-6-phosphate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012062
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004538 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000098 kbaZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001744 kbaZ CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003044 kbaZ CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003164 kbaZ CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000576 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003748 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000616 gatZ CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0004789 gatZ CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004490 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002306 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008065 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003252 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007975 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003201 agaZ CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001057 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005998 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007293 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009719 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080059 kbaZ CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003602 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004226 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005494 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005678 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003640 kbaZ CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008044 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002808 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007786 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006302 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007833 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007397 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009282 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005882 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007087 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006068 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008972 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007665 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005474 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006319 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028157 kbaZ CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007260 kbaZ CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008007 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003648 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002922 kbaZ CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003200 kbaZ CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003779 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003702 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003753 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177759 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003479 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003427 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134069 kbaZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005976 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003570 agaZ CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001870 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009645 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003387 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004577 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006405 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074577 agaZ CDS
Person Approved Go view Shigella flexneri 301 ABT-0089407 agaZ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003815 kbaZ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003737 kbaZ CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242835 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007498 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000540 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006823 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002510 agaZ CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118066 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006613 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005016 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004189 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006475 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006498 agaZ CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032983 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004545 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003651 agaZ CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000808 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006146 agaZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004888 agaZ CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003182 agaZ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003824 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001159 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006644 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002718 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0010295 kbaZ lambda repressor assay Doodle - bnumber: b3132 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21032mutantTn5 InsertionRequest the StrainABE-0010295kbaZagaZ::Tn5KAN-I-SceI at position 745 in Minus orientation ,- pKD465Blattner Laboratory
FB21033mutantTn5 InsertionRequest the StrainABE-0010295kbaZagaZ::Tn5KAN-I-SceI at position 745 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3273914 to 3285194
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010279garPCDScomplement32735733274907Upstream
ABE-0010284garDCDSforward32752823276853Upstream
ABE-0010287prlFCDSforward32770023277337Upstream
ABE-0010289yhaVCDSforward32773373277801Upstream
ABE-0285586repeat_regionforward32778193277847Upstream
ABE-0010291agaRCDScomplement32778563278665Upstream
ABE-0010295kbaZCDSforward32789143280194Matches
ABE-0010297agaVCDSforward32802173280690Downstream
ABE-0010299agaWpseudogeneforward32807013281076Downstream
ABE-0285164agaW_1CDSpforward32807013281102Downstream
ABE-0010302agaApseudogeneforward32810713281625Downstream
ABE-0285587repeat_regionforward32817023281783Downstream
ABE-0010305agaSCDSforward32819763283130Downstream
ABE-0010307kbaYCDSforward32831433284003Downstream
ABE-0010310agaBCDSforward32841703284646Downstream
ABE-0010312agaCCDSforward32846853285488Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.