Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010441 (folP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010441 showshow history
Names
folP dhpS JW3144 ECK3166 b3177
Product
7,8-dihydropteroate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3324063 3324911 849 283
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001161
EnteroFam0010441: Trusted threshold=719.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000489 (IPR000489 Pterin-binding domain) Apr 2008
Automated Process Approved IPR006390 (IPR006390 Dihydropteroate synthase) Apr 2008
Automated Process Approved IPR011005 (IPR011005 Dihydropteroate synthase-like) Apr 2008
Automated Process Approved PF00809 (PF00809 Pterin binding enzyme) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0042558 pteridine-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000489
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009396 folic acid-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000489
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004156 dihydropteroate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000489
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name folP Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3144 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym dhpS Published Annotation - GenBank Accession Number: BX950851
Reference: Erwinia carotovora SCRI1043 		Sep 2007
Person Approved synonym ECK3166 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3177 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 7,8-dihydropteroate synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 7,8-dihydropteroate synthase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010441: Trusted threshold=719.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001161
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000489 Pterin-binding domain Protein Sequence Similarity - InterPro Domain: IPR000489
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00809 Pterin binding enzyme Protein Sequence Similarity - PFAM Model Name: PF00809
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006390 Dihydropteroate synthase Protein Sequence Similarity - InterPro Domain: IPR006390
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011005 Dihydropteroate synthase-like Protein Sequence Similarity - InterPro Domain: IPR011005
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.5.1.15 Published Annotation - Swiss-Prot Accession Number: P0AC13 Feb 2006
Person Uncurated MultiFun 1.5.3.2 (metabolism; building block biosynthesis; cofactor, small molecule carrier; folic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010441 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG50011 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082224 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AC13 Published Annotation - Swiss-Prot Accession Number: P0AC13 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC13 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947691 Published Annotation - Entrez Gene Database ID: 947691
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Folic acid Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0046656 - folic acid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76209.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009396 folic acid-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000489
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0042558 pteridine-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000489
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004156 dihydropteroate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000489
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001161 folP CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000452 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000516 folP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000369 folP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000449 folP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000646 folP CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002863 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001136 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003858 folP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000094 folP CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000571 folP CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000032 folP CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008552 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018119 folP CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000621 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004453 folP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305834 folP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000428 folP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000375 folP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002260 folP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008114 folP CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003296 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007922 folP CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003244 folP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001016 folP CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005943 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010099 folP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008380 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080107 folP CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003655 folP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004275 folP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005460 folP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005727 folP CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003684 folP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008094 folP1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002857 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007839 folP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006354 folP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007886 folP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007344 folP CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009335 folP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005829 folP CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007142 folP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006123 folP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009027 folP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007722 folP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005529 folP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006373 folP CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028210 folP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007212 folP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008056 folP CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003690 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002965 folP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003246 folP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003825 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003707 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003647 folP CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177807 folP CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003526 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003471 folP CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134120 folP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006027 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003618 folP CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004032 folP CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001270 folP CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003634 folP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001889 folP CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008348 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003533 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002199 folP CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003693 folP CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004464 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000475 folP CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003812 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008268 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003959 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289104 folP CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007430 folP CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060927 folP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000361 dhpS CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001362 dhpS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004261 folP CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005124 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147102 folP CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004572 folP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007651 folP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004536 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003779 pseudogene
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007903 folP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010204 folP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009656 folP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007160 folP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007949 folP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006868 folP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005868 folP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006333 folP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007045 folP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007911 folP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005154 folP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003195 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003161 folP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004126 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008072 folP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007259 folP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007555 folP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007226 folP CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112338 folP CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084932 folP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003984 folP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100231 folP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005937 folP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006017 folP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004567 folP CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000532 folP CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264761 folP CDS
Person Approved Go view Shigella boydii 227 ADV-0003504 folP CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009010 folP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006459 folP CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003823 folP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074633 folP CDS
Person Approved Go view Shigella flexneri 301 ABT-0089456 folP CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003414 folP CDS
Person Approved Go view Shigella sonnei 046 ADD-0003633 folP CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0000395 CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004029 folP CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000695 VC0638 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135726 folP CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000387 folP CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000818 folP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000997 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001349 dhpS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002132 folP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002552 folP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001851 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235528 folP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008110 folP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000064 folP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008059 folP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003679 folP CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127117 folP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007862 folP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008558 folP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002053 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006822 folP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004115 folP CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030313 folP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006518 folP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003901 folP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004265 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007477 folP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007624 folP CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000510 folP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000597 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004431 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006442 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002761 folP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21059mutantTn5 InsertionRequest the StrainABE-0010441folPfolP::Tn5KAN-I-SceI at position 838 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3319063 to 3329911
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010428argGCDSforward33186373319980Downstream
ABE-0010430yhbXCDScomplement33199883321613Downstream
ABE-0010434leuUtRNAcomplement33220723322158Downstream
ABE-0010436secGCDScomplement33221733322505Downstream
ABE-0010439glmMCDScomplement33227333324070Overlaps Downstream
ABE-0010441folPCDScomplement33240633324911Matches
ABE-0010444ftsHCDScomplement33250013326935Upstream
ABE-0010447rlmECDScomplement33270353327664Upstream
ABE-0010452yhbYCDSforward33277903328083Upstream
ABE-0010454greACDScomplement33282393328715Upstream
ABE-0010458dacBCDSforward33289633330396Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.