Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010458 (dacB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010458 showshow history
Names
dacB JW3149 ECK3171 b3182
Product
D-alanyl-D-alanine carboxypeptidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3328963 3330396 1434 478
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001166
EnteroFam0010458: Trusted threshold=1326.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR000667 (IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C) Apr 2008
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Apr 2008
Automated Process Approved PF02113 (PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000667
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004185 serine-type carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000667
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name dacB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW3149 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3171 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3182 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-alanyl-D-alanine carboxypeptidase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 4 Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4 Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010458: Trusted threshold=1326.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001166
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C Protein Sequence Similarity - InterPro Domain: IPR000667
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Protein Sequence Similarity - PFAM Model Name: PF02113
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved EC number 3.4.16.4 Published Annotation - Swiss-Prot Accession Number: P24228 Feb 2006
Automated Process Uncurated EC number 3.4.16.- Published Annotation - Database Name: EC2GO: GO:0004185
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated MultiFun 5.6.4 (cell processes; protection; drug resistance/sensitivity) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.1 (cell processes; cell division) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24228 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P24228 Published Annotation - Swiss-Prot Accession Number: P24228 Jan 2005
Automated Process Approved db xref ASAP:ABE-0010458 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:1789573 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10202 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947693 Published Annotation - Entrez Gene Database ID: 947693
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0009252 - peptidoglycan biosynthetic process; GO_process: GO:0042493 - response to drug Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC76214.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0042493 response to drug Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000667
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004185 serine-type carboxypeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000667
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001166 dacB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000457 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001729 dacB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001376 dacB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000685 dacB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000397 dacB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002858 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001141 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003864 dacB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000089 dacB CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000565 dacB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000038 dacB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008557 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0018127 dacB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000616 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004448 dacB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305858 dacB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000422 dacB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000370 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002255 dacB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003301 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007917 dacB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003249 dacB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001011 dacB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005936 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010104 dacB CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010473 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080113 dacB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003660 dacB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004280 dacB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003689 dacB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008099 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002862 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007844 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006359 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007891 dacB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009340 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007148 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006128 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008487 dacB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006378 dacB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028215 dacB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009825 dacB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008061 dacB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003695 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002970 dacB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003251 dacB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003830 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003753 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003702 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003653 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177812 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003531 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003476 dacB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134125 dacB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006032 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003624 dacB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004027 dacB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001265 dacB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003639 dacB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001894 dacB CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008353 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003528 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002205 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003688 dacB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004471 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000470 dacB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003817 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008263 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003954 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289098 dacB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007425 dacB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060922 dacB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000366 dacD CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000175 dacD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003556 dacB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005118 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147119 dacB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007657 dacB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004529 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003784 dacB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007909 dacB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010227 dacB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009679 dacB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007955 dacB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006874 dacB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008466 dacB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006340 dacB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007051 dacB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007917 dacB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005148 dacB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003200 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003166 dacB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004133 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008079 dacB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007252 dacB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007562 dacB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007233 dacB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112357 dacB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084937 dacB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003992 dacB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100246 dacB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005930 dacB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006011 dacB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009341 dacB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000538 dacB CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265981 dacB CDS
Person Approved Go view Shigella boydii 227 ADV-0003499 dacB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009005 dacB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003828 dacB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074638 dacB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089461 dacB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003419 dacB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003638 dacB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004024 dacB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000689 VC0632 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000805 dacB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000992 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001329 dacB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002127 dacB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002557 dacB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001846 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235521 dacB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008105 dacB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000070 dacB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008064 dacB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003684 dacB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127137 dacB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007857 dacB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008553 dacB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000587 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004110 dacB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030308 dacB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006513 dacB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003907 dacB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004271 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007472 dacB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007629 dacB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000505 dacB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000590 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004436 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006421 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002767 dacB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3323963 to 3335396
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010439glmMCDScomplement33227333324070Upstream
ABE-0010441folPCDScomplement33240633324911Upstream
ABE-0010444ftsHCDScomplement33250013326935Upstream
ABE-0010447rlmECDScomplement33270353327664Upstream
ABE-0010452yhbYCDSforward33277903328083Upstream
ABE-0010454greACDScomplement33282393328715Upstream
ABE-0010458dacBCDSforward33289633330396Matches
ABE-0285591repeat_regionforward33304603330557Downstream
ABE-0010462obgECDScomplement33305823331754Downstream
ABE-0010464yhbECDScomplement33317703332735Downstream
ABE-0010468rpmACDScomplement33328623333119Downstream
ABE-0010470rplUCDScomplement33331403333451Downstream
ABE-0010474ispBCDSforward33337103334681Downstream
ABE-0010477sfsBCDSforward33349093335187Downstream
ABE-0010479murACDScomplement33352353336494Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.