Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010474 (ispB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010474 showshow history
Names
ispB yhbD JW3154 ECK3176 cel b3187
Product
octaprenyl diphosphate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3333710 3334681 972 324
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001170
EnteroFam0010474: Trusted threshold=888.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR000092 (IPR000092 Polyprenyl synthetase) Apr 2008
Automated Process Approved IPR008949 (IPR008949 Isoprenoid synthase domain superfamily) Apr 2008
Automated Process Approved PF00348 (PF00348 Polyprenyl synthetase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000092
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ispB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym ECK3176 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym cel Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3154 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yhbD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved locus tag b3187 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product octaprenyl diphosphate synthase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name octaprenyl-diphosphate synthase Published Annotation - Swiss-Prot Accession Number: 9139929 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010474: Trusted threshold=888.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001170
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF00348 Polyprenyl synthetase Protein Sequence Similarity - PFAM Model Name: PF00348
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR000092 Polyprenyl synthetase Protein Sequence Similarity - InterPro Domain: IPR000092
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR008949 Isoprenoid synthase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008949
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 2.5.1.- Published Annotation - Swiss-Prot Accession Number: P0AD57 Feb 2006
Person Uncurated MultiFun 1.5.3.11 (metabolism; building block biosynthesis; cofactor, small molecule carrier; menaquinone, ubiquinone) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10017 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:947364 Published Annotation - Entrez Gene Database ID: 947364
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref GI:1789578 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AD57 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0010474 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0AD57 Published Annotation - Swiss-Prot Accession Number: P0AD57 Jan 2006
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved protein id AAC76219.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000092
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001170 ispB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000462 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000629 ispB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000660 ispB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001053 ispB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001250 ispB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002853 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001150 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003871 ispB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000082 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000560 ispB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000042 ispB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008565 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019895 ispB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000611 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004441 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305885 ispB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000416 ispB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000363 ispB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002250 ispB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008508 ispB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003306 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007911 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003253 ispB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001006 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005930 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009040 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080119 ispB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003665 ispB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004285 ispB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008920 ispB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009165 ispB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003694 ispB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008105 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002505 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007849 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006364 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007896 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009701 ispB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009345 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010818 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007154 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006133 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008492 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010914 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008614 ispB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006383 ispB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028220 ispB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009819 ispB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008067 ispB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003700 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002975 ispB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003256 ispB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003835 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003893 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003697 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003659 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177817 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003536 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003481 ispB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134130 ispB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006037 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003630 ispB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004020 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001258 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003644 ispB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001901 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008360 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003510 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002223 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003682 ispB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004477 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000463 ispB CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003823 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008243 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003950 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289094 ispB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007407 ispB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060917 ispB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000365 ispB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002507 ispB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003550 ispB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0005112 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147132 ispB CDS
Person Uncurated Go view Pseudomonas aeruginosa PA7 AES-0005209 ispB CDS
Person Uncurated Go view Pseudomonas aeruginosa PAO1 AEW-0004630 ispB CDS
Person Uncurated Go view Pseudomonas aeruginosa UCBPP-PA14 AEX-0004937 ispB CDS
Person Uncurated Go view Pseudomonas entomophila L48 AEV-0000769 ispB CDS
Person Uncurated Go view Pseudomonas fluorescens Pf-5 AEY-0005338 ispB CDS
Person Uncurated Go view Pseudomonas fluorescens PfO-1 AEZ-0006030 CDS
Person Uncurated Go view Pseudomonas mendocina ymp AFA-0004633 CDS
Person Uncurated Go view Pseudomonas putida F1 AFB-0000912 CDS
Person Uncurated Go view Pseudomonas putida GB-1 AFC-0014353 CDS
Person Uncurated Go view Pseudomonas putida KT2440 AFD-0000705 ispB CDS
Person Uncurated Go view Pseudomonas putida W619 AFE-0005516 CDS
Person Uncurated Go view Pseudomonas savastanoi NCPPB 3335 AER-0002311 CDS
Person Uncurated Go view Pseudomonas stutzeri A1501 AFF-0000973 ispB CDS
Person Uncurated Go view Pseudomonas syringae pv. phaseolicola 1448A AFH-0000727 ispB CDS
Person Uncurated Go view Pseudomonas syringae pv. syringae B728a AFG-0001657 CDS
Person Approved Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000814 ispB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007662 ispB CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003790 ispB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007915 ispB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010245 ispB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009697 ispB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007146 ispB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007961 ispB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006880 ispB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008460 ispB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006346 ispB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007057 ispB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007923 ispB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005142 ispB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003205 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003171 ispB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004139 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008085 ispB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007246 ispB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007568 ispB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007239 ispB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112372 ispB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084942 ispB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003998 ispB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100259 ispB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005924 ispB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006005 ispB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008554 ispB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000545 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267295 ispB CDS
Person Approved Go view Shigella boydii 227 ADV-0003494 ispB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009000 ispB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007334 ispB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003833 ispB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074644 ispB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089466 ispB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003424 ispB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003643 ispB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004019 ispB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000473 VC0434 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000660 ispB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000794 ispB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000985 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001300 cel CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002120 cel CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002564 ispB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001839 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235501 ispB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008097 ispB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000079 ispB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008071 ispB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003691 ispB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127171 ispB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007850 ispB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008546 ispB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001310 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006810 ispB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004103 ispB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030301 ispB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006506 ispB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003916 ispB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004280 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007465 ispB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007636 ispB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000498 ispB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000582 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004457 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006393 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002772 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3328710 to 3339681
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010454greACDScomplement33282393328715Upstream
ABE-0010458dacBCDSforward33289633330396Upstream
ABE-0285591repeat_regionforward33304603330557Upstream
ABE-0010462obgECDScomplement33305823331754Upstream
ABE-0010464yhbECDScomplement33317703332735Upstream
ABE-0010468rpmACDScomplement33328623333119Upstream
ABE-0010470rplUCDScomplement33331403333451Upstream
ABE-0010474ispBCDSforward33337103334681Matches
ABE-0010477sfsBCDSforward33349093335187Downstream
ABE-0010479murACDScomplement33352353336494Downstream
ABE-0010481ibaGCDScomplement33365493336803Downstream
ABE-0285592repeat_regionforward33369193336952Downstream
ABE-0010487mlaBCDScomplement33369633337256Downstream
ABE-0010489mlaCCDScomplement33372563337891Downstream
ABE-0010493mlaDCDScomplement33379103338461Downstream
ABE-0010495mlaECDScomplement33384663339248Downstream
ABE-0010498mlaFCDScomplement33392563340065Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.