Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010479 (murA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010479 showshow history
Names
murA JW3156 ECK3178 murZ mrbA b3189
Product
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3335235 3336494 1260 420
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001172
EnteroFam0010479: Trusted threshold=1219.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001986 (IPR001986 Enolpyruvate transferase domain) Apr 2008
Automated Process Approved IPR005750 (IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase) Apr 2008
Automated Process Approved IPR013792 (IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta) Apr 2008
Automated Process Approved PF00275 (PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)) Jul 2018
Automated Process Uncurated CBM48 (CBM48 Carbohydrate-Binding Module Family 48) Jul 2018
Automated Process Uncurated GH13 (GH13 Glycoside Hydrolase Family 13) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0019277 UDP-N-acetylgalactosamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013792
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008760 UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005750
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001986
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name murA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym murZ Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW3156 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3178 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym mrbA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3189 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product UDP-N-acetylglucosamine 1-carboxyvinyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name UDP-N-acetylglucosamine 1-carboxyvinyltransferase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010479: Trusted threshold=1219.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001172
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase Protein Sequence Similarity - InterPro Domain: IPR005750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GH13 Glycoside Hydrolase Family 13 Protein Sequence Similarity - CAZy Model Name: GH13
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001986 Enolpyruvate transferase domain Protein Sequence Similarity - InterPro Domain: IPR001986
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Protein Sequence Similarity - InterPro Domain: IPR013792
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family CBM48 Carbohydrate-Binding Module Family 48 Protein Sequence Similarity - CAZy Model Name: CBM48
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Protein Sequence Similarity - PFAM Model Name: PF00275
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.5.1.- Published Annotation - Database Name: EC2GO: GO:0016765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 2.5.1.7 Published Annotation - Swiss-Prot Accession Number: P0A749 Feb 2006
Automated Process Uncurated EC number 2.5.-.- Published Annotation - Database Name: EC2GO: GO:0016765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A749 Published Annotation - Swiss-Prot Accession Number: P0A749 Jan 2006
Automated Process Approved db xref GeneID:947703 Published Annotation - Entrez Gene Database ID: 947703
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG11358 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789580 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A749 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010479 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Murein sacculus, peptidoglycan Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of prsA ASAP:4054:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76221.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019277 UDP-N-acetylgalactosamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005750
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013792
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008760 UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005750
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001986
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001172 murA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001216 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000363 murA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000219 murA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000161 murA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000762 murA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001968 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003941 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129656 murA CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105075 murA CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104497 murA CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003873 murA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000080 murA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000558 murA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000044 murA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008939 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015691 murA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000309 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004439 murA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305890 murA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000414 murA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000361 murA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002248 murA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008506 murA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003308 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007909 murA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003255 murA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001004 murA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005928 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008776 murA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009042 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080121 murA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003667 murA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004287 murA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008918 murA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009167 murA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003696 murA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008107 murA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002507 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007851 murA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006366 murA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007898 murA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009703 murA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009347 murA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007156 murA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006135 murA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008494 murA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008616 murA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006385 murA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028222 murA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009817 murA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008069 murA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003702 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003258 murA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003837 murA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003891 murA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003695 murA CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003661 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177819 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003538 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003483 murA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134132 murA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006039 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003632 murA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000080 murA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000283 murA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003646 murA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001903 murA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008700 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003508 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002225 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003680 murA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004479 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000461 murA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003825 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008241 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003948 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289092 murA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007405 murA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060519 murA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000200 murA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001295 murA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000066 murA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004790 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146003 murA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004515 murA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007664 murA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004519 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003792 murA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007917 murA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010251 murA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009702 murA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007144 murA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007963 murA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006882 murA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008458 murA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006348 murA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007059 murA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007925 murA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005140 murA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003207 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003173 murA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004141 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008087 murA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007244 murA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007570 murA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007241 murA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112377 murA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084944 murA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004000 murA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100264 murA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005922 murA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006003 murA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008556 murA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001494 murA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267591 murA CDS
Person Approved Go view Shigella boydii 227 ADV-0003492 murA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008998 murA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007332 murA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003835 murA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074646 murA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089468 murA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003426 murA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003645 murA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004017 murA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002614 VC2514 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000502 murA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007518 murA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002300 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010766 murA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002726 murA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003115 murA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000173 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243489 murA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005248 murA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004455 murA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005774 murA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003745 murA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127312 murA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007792 murA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008489 murA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003409 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006754 murA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008326 murA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029729 murA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006448 murA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004148 murA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000383 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006694 murA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004393 murA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003625 murA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004409 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000603 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006386 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002774 murA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3330235 to 3341494
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010458dacBCDSforward33289633330396Downstream
ABE-0285591repeat_regionforward33304603330557Downstream
ABE-0010462obgECDScomplement33305823331754Downstream
ABE-0010464yhbECDScomplement33317703332735Downstream
ABE-0010468rpmACDScomplement33328623333119Downstream
ABE-0010470rplUCDScomplement33331403333451Downstream
ABE-0010474ispBCDSforward33337103334681Downstream
ABE-0010477sfsBCDSforward33349093335187Downstream
ABE-0010479murACDScomplement33352353336494Matches
ABE-0010481ibaGCDScomplement33365493336803Upstream
ABE-0285592repeat_regionforward33369193336952Upstream
ABE-0010487mlaBCDScomplement33369633337256Upstream
ABE-0010489mlaCCDScomplement33372563337891Upstream
ABE-0010493mlaDCDScomplement33379103338461Upstream
ABE-0010495mlaECDScomplement33384663339248Upstream
ABE-0010498mlaFCDScomplement33392563340065Upstream
ABE-0010502yrbGCDSforward33402753341252Upstream
ABE-0010504kdsDCDSforward33412663342252Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.