Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010502 (yrbG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010502 showshow history
Names
yrbG JW3163 ECK3185 b3196
Product
putative transport protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3340275 3341252 978 326
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001179
EnteroFam0010502: Trusted threshold=737.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004481 (IPR004481 Sodium/potassium/calcium exchanger) Apr 2008
Automated Process Approved IPR004837 (IPR004837 Sodium/calcium exchanger membrane region) Apr 2008
Automated Process Approved PF01699 (PF01699 Sodium/calcium exchanger protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004837
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004837
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0005432 calcium:sodium antiporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name yrbG Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3185 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3163 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3196 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative transport protein Published Annotation - EcoCyc Accession Number: EG12802
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name predicted calcium/sodium:proton antiporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative Na:Ca transport protein (CacA family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010502: Trusted threshold=737.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001179
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004481 Sodium/potassium/calcium exchanger Protein Sequence Similarity - InterPro Domain: IPR004481
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004837 Sodium/calcium exchanger membrane region Protein Sequence Similarity - InterPro Domain: IPR004837
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01699 Sodium/calcium exchanger protein Protein Sequence Similarity - PFAM Model Name: PF01699
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.133 (transport; substrate; Na+/Ca+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.19 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Ca2+:Cation Antiporter (CaCA) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12802 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789587 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947730 Published Annotation - Entrez Gene Database ID: 947730
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P45394 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010502 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P45394 Published Annotation - Swiss-Prot Accession Number: P45394 Jan 2005
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0005432 - calcium:sodium antiporter activity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76228.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004837
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004837
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0005432 calcium:sodium antiporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001179 yrbG CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001209 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000825 yrbG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001641 yrbG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000839 yrbG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001748 yrbG CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003880 yrbG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000072 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000551 yrbG CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000051 yrbG CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008947 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015681 yrbG CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000302 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004432 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305909 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000407 yrbG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000354 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002241 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008499 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003315 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007902 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003261 yrbG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000997 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005918 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008783 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009049 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080130 yrbG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003674 yrbG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004294 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008911 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009174 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003703 yrbG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008116 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002514 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007858 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006373 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007905 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009710 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009354 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009819 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007163 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006142 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008501 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009291 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008623 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006392 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028229 yrbG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009810 yrbG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008076 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003709 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002983 yrbG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003265 yrbG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003844 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003884 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003688 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003670 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177826 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003545 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003490 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134139 yrbG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006046 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003641 yrbG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000073 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003653 yrbG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001910 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008709 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003501 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002232 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003673 yrbG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004486 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000454 yrbG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003832 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008234 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003941 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289085 yrbG CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007398 yrbG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060512 yrbG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003094 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002384 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000059 yrbG CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004781 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146019 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004551 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007671 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004512 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003799 yrbG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007924 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010271 yrbG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009722 yrbG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007137 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007970 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006889 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008451 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006355 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007066 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007932 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005133 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003214 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003180 yrbG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004149 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008094 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007237 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007577 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007248 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112390 yrbG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084951 yrbG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004008 yrbG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100284 yrbG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005915 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005996 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008563 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001487 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263905 CDS
Person Approved Go view Shigella boydii 227 ADV-0003485 yrbG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008991 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007325 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003842 yrbG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074653 yrbG CDS
Person Approved Go view Shigella flexneri 301 ABT-0089475 yrbG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003433 yrbG CDS
Person Approved Go view Shigella sonnei 046 ADD-0003652 yrbG CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002622 VC2522 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007532 yrbG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002307 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010784 yrbG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002733 yrbG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003122 yrbG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000165 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243503 yrbG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005255 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004446 yrbG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005767 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003752 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127333 yrbG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007785 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008482 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003503 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006747 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008072 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029736 yrbG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006441 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004156 yrbG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000374 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006687 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004386 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003632 yrbG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004417 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000594 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006359 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002781 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21865mutantTn5 InsertionRequest the StrainABE-0010502yrbGyrbG::Tn5KAN-I-SceI at position 333 in Minus orientation ,+ pKD460Blattner Laboratory
FB23296mutantTn5 InsertionRequest the StrainABE-0010502yrbGyrbG::Tn5KAN-I-SceI at position 333 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3335275 to 3346252
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010479murACDScomplement33352353336494Upstream
ABE-0010481ibaGCDScomplement33365493336803Upstream
ABE-0285592repeat_regionforward33369193336952Upstream
ABE-0010487mlaBCDScomplement33369633337256Upstream
ABE-0010489mlaCCDScomplement33372563337891Upstream
ABE-0010493mlaDCDScomplement33379103338461Upstream
ABE-0010495mlaECDScomplement33384663339248Upstream
ABE-0010498mlaFCDScomplement33392563340065Upstream
ABE-0010502yrbGCDSforward33402753341252Matches
ABE-0010504kdsDCDSforward33412663342252Downstream
ABE-0010506kdsCCDSforward33422733342839Downstream
ABE-0010508lptCCDSforward33428363343411Downstream
ABE-0010510lptACDSforward33433803343937Downstream
ABE-0010512lptBCDSforward33439443344669Downstream
ABE-0010514rpoNCDSforward33447173346150Downstream
ABE-0010516hpfCDSforward33461733346460Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.