Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010504 (kdsD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010504 showshow history
Names
kdsD yrbH JW3164 ECK3186 b3197
Product
D-arabinose 5-phosphate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3341266 3342252 987 329
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001180
EnteroFam0010504: Trusted threshold=890.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004800 (IPR004800 Phosphosugar isomerase, KdsD/KpsF-type) Apr 2008
Automated Process Approved IPR001347 (IPR001347 Sugar isomerase (SIS)) Apr 2008
Automated Process Approved IPR000644 (IPR000644 CBS domain) Apr 2008
Automated Process Approved PF01380 (PF01380 SIS domain) Jul 2018
Automated Process Approved PF00571 (PF00571 CBS domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:1901135 carbohydrate derivative metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004800
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0097367 carbohydrate derivative binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016853 isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004800
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kdsD Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3164 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yrbH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym ECK3186 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3197 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product D-arabinose 5-phosphate isomerase Experimental - PubMed ID: 12805358
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Protein Family
Person Approved EnteroFam EnteroFam0010504: Trusted threshold=890.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001180
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001347 Sugar isomerase (SIS) Protein Sequence Similarity - InterPro Domain: IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01380 SIS domain Protein Sequence Similarity - PFAM Model Name: PF01380
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00571 CBS domain Protein Sequence Similarity - PFAM Model Name: PF00571
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000644 CBS domain Protein Sequence Similarity - InterPro Domain: IPR000644
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004800 Phosphosugar isomerase, KdsD/KpsF-type Protein Sequence Similarity - InterPro Domain: IPR004800
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 5.-.-.- Published Annotation - Database Name: EC2GO: GO:0016853
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 5.3.1.13 Published Annotation - Swiss-Prot Accession Number: P45395 Feb 2006
Person Uncurated MultiFun 3.1.4 (regulation; type of regulation; regulation level unknown) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.7 (cell structure; capsule (M and K antigens)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12803 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010504 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P45395 Published Annotation - Swiss-Prot Accession Number: P45395 Jan 2005
Automated Process Approved db xref GI:1789588 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947734 Published Annotation - Entrez Gene Database ID: 947734
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P45395 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative isomerase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76229.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:1901135 carbohydrate derivative metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004800
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0097367 carbohydrate derivative binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016853 isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004800
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001180 kdsD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001208 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000634 kdsD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000502 kdsD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000153 kdsD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000576 kdsD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001960 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003933 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003881 yrbH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000071 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000550 kdsD_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000052 kdsD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008949 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015680 kdsD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000301 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004431 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305914 kdsD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000406 yrbH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000353 yrbH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002240 kdsD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008498 kdsD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003317 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007901 kdsD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003262 kdsD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000996 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005917 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008784 kdsD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009050 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080131 kdsD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003675 yrbH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004295 yrbH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008910 kdsD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009175 kdsD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003704 kdsD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008117 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002515 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007859 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006374 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007906 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009711 kdsD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009355 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009820 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007164 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006143 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008502 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009292 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008624 kdsD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006393 kdsD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028230 kdsD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009809 kdsD_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008077 kdsD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003710 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002984 kdsD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003266 kdsD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003845 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003883 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003687 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003671 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003546 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003491 kdsD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134140 kdsD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006047 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003642 yrbH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000072 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000273 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003654 yrbH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001911 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008711 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003500 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002233 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003672 kdsD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004487 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000453 kdsD CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003833 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008233 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003940 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289084 kdsD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007397 yrbH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060511 kdsD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000246 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002385 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000058 kdsD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004780 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146022 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004522 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007672 kdsD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004511 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003800 kdsD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007925 kdsD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010275 yrbH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009726 yrbH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007136 kdsD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007971 kdsD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006890 kdsD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008450 kdsD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006356 kdsD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007067 kdsD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007933 kdsD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005132 kdsD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003215 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003181 kdsD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004150 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008095 kdsD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007236 kdsD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007578 kdsD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007249 kdsD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112393 kdsD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084952 kdsD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004009 yrbH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100287 kdsD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005914 kdsD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005995 kdsD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008564 kdsD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001486 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267599 CDS
Person Approved Go view Shigella boydii 227 ADV-0003484 yrbH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008990 kdsD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007324 kdsD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003843 yrbH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074654 kdsD CDS
Person Approved Go view Shigella flexneri 301 ABT-0089476 kdsD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003434 yrbH CDS
Person Approved Go view Shigella sonnei 046 ADD-0003653 kdsD CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004009 yrbH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002623 VC2523 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000500 kdsD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007534 yrbH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002308 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010789 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002734 kdsD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003123 kdsD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000164 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243504 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005256 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004445 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005766 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003753 kdsD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127345 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007784 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008481 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003502 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006746 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008071 kdsD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029737 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006440 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004158 kdsD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000373 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006686 kdsD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004385 kdsD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003633 kdsD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004419 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000593 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006354 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002782 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3336266 to 3347252
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010479murACDScomplement33352353336494Upstream
ABE-0010481ibaGCDScomplement33365493336803Upstream
ABE-0285592repeat_regionforward33369193336952Upstream
ABE-0010487mlaBCDScomplement33369633337256Upstream
ABE-0010489mlaCCDScomplement33372563337891Upstream
ABE-0010493mlaDCDScomplement33379103338461Upstream
ABE-0010495mlaECDScomplement33384663339248Upstream
ABE-0010498mlaFCDScomplement33392563340065Upstream
ABE-0010502yrbGCDSforward33402753341252Upstream
ABE-0010504kdsDCDSforward33412663342252Matches
ABE-0010506kdsCCDSforward33422733342839Downstream
ABE-0010508lptCCDSforward33428363343411Downstream
ABE-0010510lptACDSforward33433803343937Downstream
ABE-0010512lptBCDSforward33439443344669Downstream
ABE-0010514rpoNCDSforward33447173346150Downstream
ABE-0010516hpfCDSforward33461733346460Downstream
ABE-0010520ptsNCDSforward33465783347069Downstream
ABE-0010522rapZCDSforward33471153347969Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.