Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010510 (lptA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010510 showshow history
Names
lptA yhbN JW3167 ECK3189 b3200
Product
periplasmic component of an ABC-type LPS transporter complex
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3343380 3343937 558 186
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001183
EnteroFam0010510: Trusted threshold=419.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR014340 (IPR014340 Lipopolysaccharide export system protein LptA) Apr 2008
Automated Process Approved IPR005653 (IPR005653 Organic solvent tolerance-like, N-terminal) Apr 2008
Automated Process Approved PF03968 (PF03968 LptA/(LptD N-terminal domain) LPS transport protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0015920 lipopolysaccharide transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014340
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014340
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Direct Assay - PubMed ID: 17056748
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Uncurated GO molecular function GO:0001530 lipopolysaccharide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014340
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name lptA Published Annotation - PubMed ID: 17056748
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3189 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3167 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yhbN Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved locus tag b3200 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product periplasmic component of an ABC-type LPS transporter complex Published Annotation - PubMed ID: 17056748
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Approved alternate product name periplasmic LPS-binding protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name predicted transporter subunit: periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2007
Person Uncurated alternate product name putative transport protein (ABC superfamily, peri_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010510: Trusted threshold=419.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001183
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR014340 Lipopolysaccharide export system protein LptA Protein Sequence Similarity - InterPro Domain: IPR014340
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005653 Organic solvent tolerance-like, N-terminal Protein Sequence Similarity - InterPro Domain: IPR005653
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03968 LptA/(LptD N-terminal domain) LPS transport protein Protein Sequence Similarity - PFAM Model Name: PF03968
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010510 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0ADV1 Published Annotation - Swiss-Prot Accession Number: P0ADV1 Jan 2006
Automated Process Approved db xref GeneID:947920 Published Annotation - Entrez Gene Database ID: 947920
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0ADV1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789592 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12618 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function lipopolysaccharide biosynthesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76232.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation regulated by rpoE (ASAP:ABE-0008467); expression of an lptAB promoter-driven lacZ reporter is increased in a strain deleted for the anti-sigma E factor rseA (ASAP:ABE-0008462) Experimental - PubMed ID: 17056748
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.50
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0015920 lipopolysaccharide transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014340
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Direct Assay - PubMed ID: 17056748
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Uncurated GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014340
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0001530 lipopolysaccharide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR014340
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000497 CDS
Member
Person Approved Go view EnteroFams ADX-0001183 lptA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001205 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000562 lptA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000488 lptA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000143 lptA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000852 lptA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001957 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003930 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003884 lptA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000068 lptA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000547 lptA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000055 lptA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008953 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015677 lptA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000298 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004428 lptA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305922 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000403 yhbN CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000350 yhbN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002237 lptA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008495 lptA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003320 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007898 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003265 yhbN CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000993 lptA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005911 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008787 lptA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009053 LptA CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080134 yhbN CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003678 lptA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004298 lptA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008907 lptA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009178 lptA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003707 lptA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008120 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002518 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007862 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006377 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007909 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009714 lptA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009358 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009823 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007167 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006146 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008505 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009295 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008627 lptA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006396 lptA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028233 yhbN CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009806 lptA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008080 lptA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003713 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002987 yhbN CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003269 yhbN CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003848 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003880 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003684 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003674 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177831 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003549 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003494 lptA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134143 yhbN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006050 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003645 yhbN CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000069 lptA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000270 lptA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003657 yhbN CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001914 lptA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008715 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003497 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002236 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003669 yhbN CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004490 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000450 yhbN CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003836 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008230 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003937 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289081 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007394 yhbN CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060508 yhbN CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002387 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000055 yhbN CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004775 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146027 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007675 lptA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004508 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003803 yhbN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007928 lptA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010286 yhbN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009735 yhbN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007133 lptA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007974 lptA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006893 lptA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008447 lptA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006359 lptA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007070 lptA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007936 lptA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005129 lptA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003218 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003184 yhbN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004153 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008098 lptA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007233 lptA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007581 lptA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007252 lptA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112399 yhbN CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084955 yhbN CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004012 yhbN CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100296 yhbN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005911 lptA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005992 lptA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008567 lptA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001483 lptA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267602 CDS
Person Approved Go view Shigella boydii 227 ADV-0003481 yhbN CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008987 lptA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007321 lptA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003846 yhbN CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074657 yhbN CDS
Person Approved Go view Shigella flexneri 301 ABT-0089479 yhbN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003437 yhbN CDS
Person Approved Go view Shigella sonnei 046 ADD-0003656 yhbN CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004006 lptA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002626 VC2527 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007539 yhbN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002311 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010798 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002737 lptA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001386 lptA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000161 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243508 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005259 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004440 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005763 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003756 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127351 lptA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007781 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008478 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001422 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006743 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008068 yhbN CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029741 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006437 yhbN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004162 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000368 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006683 yhbN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004382 yhbN CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003636 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004423 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000588 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006346 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002785 lptA CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0010510 lptA lambda repressor assay Doodle - bnumber: b3200 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3338380 to 3348937
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010493mlaDCDScomplement33379103338461Upstream
ABE-0010495mlaECDScomplement33384663339248Upstream
ABE-0010498mlaFCDScomplement33392563340065Upstream
ABE-0010502yrbGCDSforward33402753341252Upstream
ABE-0010504kdsDCDSforward33412663342252Upstream
ABE-0010506kdsCCDSforward33422733342839Upstream
ABE-0010508lptCCDSforward33428363343411Overlaps Upstream
ABE-0010510lptACDSforward33433803343937Matches
ABE-0010512lptBCDSforward33439443344669Downstream
ABE-0010514rpoNCDSforward33447173346150Downstream
ABE-0010516hpfCDSforward33461733346460Downstream
ABE-0010520ptsNCDSforward33465783347069Downstream
ABE-0010522rapZCDSforward33471153347969Downstream
ABE-0010524nprCDSforward33479663348238Downstream
ABE-0010528yrbLCDSforward33484523349084Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.