Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010512 (lptB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010512 showshow history
Names
lptB yhbG JW3168 ECK3190 b3201
Product
ATP-binding component of an ABC-type LPS transporter complex
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3343944 3344669 726 242
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001184
EnteroFam0010512: Trusted threshold=696; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR032823 (IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal) Jul 2018
Automated Process Approved IPR030921 (IPR030921 LPS export ABC transporter, ATP-binding protein LptB) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Automated Process Approved PF12399 (PF12399 Branched-chain amino acid ATP-binding cassette transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name lptB Published Annotation - PubMed ID: 17056748
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3190 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yhbG Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3168 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3201 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC-type LPS transporter complex Published Annotation - PubMed ID: 17056748
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved alternate product name putative ATP-binding component of a transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name lipopolysaccharide export ABC transporter ATP-binding protein of the LptBFGC export complex Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name predicted transporter subunit: ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0010512: Trusted threshold=696; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001184
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Protein Sequence Similarity - InterPro Domain: IPR032823
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR030921 LPS export ABC transporter, ATP-binding protein LptB Protein Sequence Similarity - InterPro Domain: IPR030921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF12399 Branched-chain amino acid ATP-binding cassette transporter Protein Sequence Similarity - PFAM Model Name: PF12399
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947725 Published Annotation - Entrez Gene Database ID: 947725
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A9V1 Published Annotation - Swiss-Prot Accession Number: P0A9V1 Jan 2006
Automated Process Approved db xref GI:1789593 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9V1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010512 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11680 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative ATP-binding component of a transport system; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76233.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation regulated by rpoE (ASAP:ABE-0008467); expression of an lptAB promoter-driven lacZ reporter is increased in a strain deleted for the anti-sigma E factor rseA (ASAP:ABE-0008462) Experimental - PubMed ID: 17056748
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.12
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030921
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001184 lptB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001204 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000490 lptB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000396 lptB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000141 lptB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000850 lptB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001956 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003929 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003885 lptB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000067 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000546 lptB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000056 lptB CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0008955 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015676 lptB CDS
Automated Process Approved Go view Dickeya parazeae Ech586 AGC-0000297 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004427 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0305925 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000402 yhbG CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000349 yhbG CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0002236 lptB CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0008494 lptB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003321 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0007897 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003266 yhbG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000992 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005910 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0008788 lptB CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0009054 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080135 yhbG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004299 lptB CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0008906 lptB CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0009179 lptB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003708 lptB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008121 lptB CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0002519 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0007863 lptB CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0006378 lptB CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0007910 lptB CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0009715 lptB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009359 lptB CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0009824 lptB CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0007168 lptB CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0006147 lptB CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0008506 lptB CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0009296 lptB CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0008628 lptB CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0006397 lptB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028234 yhbG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009805 lptB_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008081 lptB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003714 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0002988 yhbG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003270 yhbG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003849 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003879 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003683 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003675 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003550 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003495 lptB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134144 yhbG CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0006051 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003646 yhbG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000068 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000269 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003658 yhbG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001915 CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0008717 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003496 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002237 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003668 yhbG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004491 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000449 yhbG CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0003837 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008229 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0003936 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289080 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007393 yhbG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060507 yhbG CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0000179 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000100 CDS
Person Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000053 CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0004774 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146028 yhbG CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004526 CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0007676 lptB CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0004507 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003804 yhbG CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0007929 lptB CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0010289 yhbG CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0009738 yhbG CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0007132 lptB CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0007975 lptB CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0006894 lptB CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0008446 lptB CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0006360 lptB CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0007071 lptB CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0007937 lptB CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0005128 lptB CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0003219 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003185 yhbG CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0004154 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0008099 lptB CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0007232 lptB CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0007582 lptB CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0007253 lptB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112400 yhbG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084956 yhbG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004013 yhbG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100297 yhbG CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0005910 lptB CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0005991 lptB CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0008568 lptB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001482 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267603 CDS
Person Approved Go view Shigella boydii 227 ADV-0003480 yhbG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008986 lptB CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0007320 lptB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003847 yhbG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074658 yhbG CDS
Person Approved Go view Shigella flexneri 301 ABT-0089480 yhbG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003438 yhbG CDS
Person Approved Go view Shigella sonnei 046 ADD-0003657 yhbG CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0004005 lptB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002627 VC2528 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000499 yhbG CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007540 yhbG CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002312 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0010802 yhbG CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002738 yhbG CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0001387 yhbG CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000160 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243509 CDS
Automated Process Approved Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005260 CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004439 CDS
Automated Process Approved Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005762 CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003757 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127352 lptB CDS
Automated Process Approved Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007780 CDS
Automated Process Approved Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008477 CDS
Automated Process Approved Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001421 CDS
Automated Process Approved Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006742 CDS
Automated Process Approved Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008067 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029742 CDS
Automated Process Approved Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006436 CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004164 CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000367 CDS
Automated Process Approved Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006682 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0004381 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003637 yhbG CDS
Automated Process Approved Go view Yersinia pseudotuberculosis PB1/+ AFV-0004425 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis YPIII AFW-0000587 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006336 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002786 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3338944 to 3349669
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010495mlaECDScomplement33384663339248Upstream
ABE-0010498mlaFCDScomplement33392563340065Upstream
ABE-0010502yrbGCDSforward33402753341252Upstream
ABE-0010504kdsDCDSforward33412663342252Upstream
ABE-0010506kdsCCDSforward33422733342839Upstream
ABE-0010508lptCCDSforward33428363343411Upstream
ABE-0010510lptACDSforward33433803343937Upstream
ABE-0010512lptBCDSforward33439443344669Matches
ABE-0010514rpoNCDSforward33447173346150Downstream
ABE-0010516hpfCDSforward33461733346460Downstream
ABE-0010520ptsNCDSforward33465783347069Downstream
ABE-0010522rapZCDSforward33471153347969Downstream
ABE-0010524nprCDSforward33479663348238Downstream
ABE-0010528yrbLCDSforward33484523349084Downstream
ABE-0010530mtgACDScomplement33490813349809Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.