Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010530 (mtgA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010530 showshow history
Names
mtgA yrbM mgt JW3175 ECK3197 b3208
Product
biosynthetic peptidoglycan transglycosylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3349081 3349809 729 243
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001190
EnteroFam0010530: Trusted threshold=608.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011812 (IPR011812 Biosynthetic peptidoglycan transglycosylase) Apr 2008
Automated Process Approved IPR001264 (IPR001264 Glycosyl transferase, family 51) Apr 2008
Automated Process Approved IPR023346 (IPR023346 Lysozyme-like domain superfamily) Jul 2018
Automated Process Approved PF00912 (PF00912 Transglycosylase) Jul 2018
Automated Process Uncurated GT51 (GT51 Glycosyl Transferase Family 51) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011812
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011812
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011812
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016763 pentosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011812
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name mtgA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3175 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yrbM Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym mgt Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3197 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3208 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product biosynthetic peptidoglycan transglycosylase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative peptidoglycan enzyme Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name peptidoglycan transglycosylase, biosynthetic Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010530: Trusted threshold=608.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001190
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011812 Biosynthetic peptidoglycan transglycosylase Protein Sequence Similarity - InterPro Domain: IPR011812
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated protein family GT51 Glycosyl Transferase Family 51 Protein Sequence Similarity - CAZy Model Name: GT51
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001264 Glycosyl transferase, family 51 Protein Sequence Similarity - InterPro Domain: IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00912 Transglycosylase Protein Sequence Similarity - PFAM Model Name: PF00912
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023346 Lysozyme-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR023346
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.4.2.- Published Annotation - Swiss-Prot Accession Number: P46022 Feb 2006
Person Uncurated MultiFun 6.2 (cell structure; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.7 (metabolism; macromolecules (cellular constituent) biosynthesis; peptidoglycan (murein)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12808 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789601 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947728 Published Annotation - Entrez Gene Database ID: 947728
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P46022 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010530 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P46022 Published Annotation - Swiss-Prot Accession Number: P46022 Jan 2005
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative peptidoglycan enzyme; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_process: GO:0009252 - peptidoglycan biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76240.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 3.70
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 6.29
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009252 peptidoglycan biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011812
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011812
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011812
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016763 pentosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011812
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001190 mtgA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001227 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001346 mtgA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001301 mtgA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002047 mtgA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001313 mtgA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001984 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003962 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003897 mtgA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000060 mtgA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000539 mtgA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000062 mtgA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008921 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015717 mtgA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000325 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004421 mtgA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305947 mtgA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000396 mtgA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000343 mtgA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002229 mtgA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008487 mtgA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003328 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007890 mtgA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003273 mtgA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000985 mtgA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005902 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008795 mtgA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009061 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080142 mtgA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003687 mtgA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004306 mtgA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008899 mtgA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009186 mtgA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003715 mtgA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008128 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002526 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007870 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006385 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007917 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009722 mtgA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009366 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009831 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007175 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006154 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008513 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009303 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008635 mtgA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006404 mtgA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028241 mtgA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009742 mtgA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008088 mtgA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003721 mtgA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002995 mtgA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003277 mtgA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003856 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003872 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003676 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003682 mtgA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177839 mtgA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003557 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003502 mtgA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134151 mtgA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006058 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003653 mtgA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000097 mtgA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000301 mtgA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003664 mtgA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001921 mtgA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008681 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0003490 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002243 mtgA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0003662 mtgA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0004498 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0000443 mtgA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0003843 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0008223 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289074 mtgA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0007387 mtgA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060535 mtgA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003086 mtgA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003463 mtgA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001009 mtgA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004809 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145952 mtgA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000433 mtgA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007683 mtgA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004500 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003811 mtgA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007936 mtgA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010312 mtgA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009761 mtgA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007125 mtgA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007982 mtgA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006901 mtgA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008439 mtgA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006367 mtgA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007078 mtgA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007944 mtgA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005121 mtgA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003226 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003192 mtgA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004161 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008106 mtgA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007225 mtgA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007589 mtgA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007260 mtgA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112420 mtgA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084963 mtgA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004020 mtgA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100319 mtgA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005903 mtgA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005984 mtgA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008575 mtgA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001509 mtgA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267377 mtgA CDS
Person Approved Go view Shigella boydii 227 ADV-0003473 mtgA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003854 mtgA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003664 mtgA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007483 mtgA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002285 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010714 mtgA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002709 mtgA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003100 mtgA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000189 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243462 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005231 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004474 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005791 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003728 mtgA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127267 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007809 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008506 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000939 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006772 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008345 mtgA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029712 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006467 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004129 mtgA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000403 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006712 mtgA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004411 mtgA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003609 mtgA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004389 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000623 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006311 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002792 mtgA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21866mutantTn5 InsertionRequest the StrainABE-0010530mtgAmtgA::Tn5KAN-I-SceI at position 81 in Minus orientation ,+ pKD460Blattner Laboratory
FB23008mutantTn5 InsertionRequest the StrainABE-0010530mtgAmtgA::Tn5KAN-I-SceI at position 81 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3344081 to 3354809
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010512lptBCDSforward33439443344669Downstream
ABE-0010514rpoNCDSforward33447173346150Downstream
ABE-0010516hpfCDSforward33461733346460Downstream
ABE-0010520ptsNCDSforward33465783347069Downstream
ABE-0010522rapZCDSforward33471153347969Downstream
ABE-0010524nprCDSforward33479663348238Downstream
ABE-0010528yrbLCDSforward33484523349084Overlaps Downstream
ABE-0010530mtgACDScomplement33490813349809Matches
ABE-0010532elbBCDScomplement33498063350459Overlaps Upstream
ABE-0047270arcZncRNAforward33505773350697Upstream
ABE-0010537arcBCDScomplement33506893353025Upstream
ABE-0010540yhcCCDScomplement33531213354050Upstream
ABE-0010545gltBCDSforward33547253359185Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.