Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010545 (gltB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010545 showshow history
Names
gltB JW3179 psiQ ECK3202 ossB aspB b3212
Product
glutamate synthase large subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3354725 3359185 4461 1487

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Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001193
EnteroFam0010545: Trusted threshold=4437.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006982 (IPR006982 Glutamate synthase, central-N) Apr 2008
Automated Process Approved IPR002932 (IPR002932 Glutamate synthase domain) Apr 2008
Automated Process Approved IPR000583 (IPR000583 (DEPRECATED) Class II glutamine amidotransferase domain) Apr 2008
Automated Process Approved IPR002489 (IPR002489 Glutamate synthase, alpha subunit, C-terminal) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR017932 (IPR017932 Glutamine amidotransferase type 2 domain) Jul 2018
Automated Process Approved IPR029055 (IPR029055 Nucleophile aminohydrolases, N-terminal) Jul 2018
Automated Process Approved IPR036485 (IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily) Jul 2018
Automated Process Approved PF01645 (PF01645 Conserved region in glutamate synthase) Jul 2018
Automated Process Approved PF04898 (PF04898 Glutamate synthase central domain) Jul 2018
Automated Process Approved PF01493 (PF01493 GXGXG motif) Jul 2018
Automated Process Approved PF00310 (PF00310 Glutamine amidotransferases class-II) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002932, IPR006982, IPR002489, IPR036485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006537 glutamate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002932
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006807 nitrogen compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006982
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002932
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015930 glutamate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006982
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002489
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gltB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ossB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3202 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3179 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym psiQ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym aspB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b3212 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product glutamate synthase large subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Protein Family
Person Approved EnteroFam EnteroFam0010545: Trusted threshold=4437.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001193
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000583 (DEPRECATED) Class II glutamine amidotransferase domain Protein Sequence Similarity - InterPro Domain: IPR000583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00310 Glutamine amidotransferases class-II Protein Sequence Similarity - PFAM Model Name: PF00310
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006982 Glutamate synthase, central-N Protein Sequence Similarity - InterPro Domain: IPR006982
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029055 Nucleophile aminohydrolases, N-terminal Protein Sequence Similarity - InterPro Domain: IPR029055
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002932 Glutamate synthase domain Protein Sequence Similarity - InterPro Domain: IPR002932
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01493 GXGXG motif Protein Sequence Similarity - PFAM Model Name: PF01493
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017932 Glutamine amidotransferase type 2 domain Protein Sequence Similarity - InterPro Domain: IPR017932
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002489 Glutamate synthase, alpha subunit, C-terminal Protein Sequence Similarity - InterPro Domain: IPR002489
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01645 Conserved region in glutamate synthase Protein Sequence Similarity - PFAM Model Name: PF01645
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04898 Glutamate synthase central domain Protein Sequence Similarity - PFAM Model Name: PF04898
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.4.1.13 Published Annotation - Swiss-Prot Accession Number: P09831 Feb 2006
Automated Process Uncurated EC number 1.4.-.- Published Annotation - Database Name: EC2GO: GO:0015930, GO:0016638
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.1 (metabolism; building block biosynthesis; amino acids; glutamate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.8.3 (metabolism; metabolism of other compounds; nitrogen metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10403 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947724 Published Annotation - Entrez Gene Database ID: 947724
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P09831 Published Annotation - Swiss-Prot Accession Number: P09831 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P09831 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010545 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:308199519 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0006537 - glutamate biosynthetic process; GO_process: GO:0006807 - nitrogen compound metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76244.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000583
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006537 glutamate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002932
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006807 nitrogen compound metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002932, IPR006982, IPR002489, IPR036485
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006807 nitrogen compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006982
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006537 glutamate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002932
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002489
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015930 glutamate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006982
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001193 gltB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000157 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001849 gltB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001678 gltB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000291 gltB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001321 gltB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001979 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003957 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003901 gltB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000055 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000534 gltB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000067 gltB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008926 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015711 gltB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000321 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004408 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002224 gltB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008482 gltB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007885 gltB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003277 gltB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000980 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005897 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008801 gltB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009067 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080147 gltB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003692 gltB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004311 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008894 gltB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009192 gltB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003720 gltB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008132 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002272 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007875 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006390 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007922 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009727 gltB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009371 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009836 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007180 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006159 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008518 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009308 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008640 gltB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006409 gltB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028245 gltB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009737 gltB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008093 gltB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003725 gltB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002999 gltB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003282 gltB CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003687 gltB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177844 gltB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003562 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003506 gltB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134155 gltB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006063 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003658 gltB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000093 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000297 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003671 gltB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001934 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008687 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060530 gltB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003088 gltB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000077 gltB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004804 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145959 gltB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005201 gltB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004494 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003815 gltB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010328 gltB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009777 gltB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003231 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003197 gltB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004170 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112428 gltB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084967 gltB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004026 gltB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100335 gltB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001505 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264891 gltB CDS
Person Approved Go view Shigella boydii 227 ADV-0003469 gltB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008974 gltB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007308 gltB CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0003858 gltB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074669 gltB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089490 gltB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003449 gltB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003668 gltB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007491 gltB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002289 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010729 aspB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003104 gltB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000185 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243471 gltB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005236 gltB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004469 gltB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005787 gltB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003733 gltB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127279 gltB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007805 gltB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008501 gltB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001963 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006767 gltB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008339 gltB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029716 gltB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006461 gltB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004134 gltB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000397 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006707 gltB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004405 gltB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003614 gltB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004395 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000617 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006269 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002796 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3349725 to 3364185
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010530mtgACDScomplement33490813349809Upstream
ABE-0010532elbBCDScomplement33498063350459Upstream
ABE-0047270arcZncRNAforward33505773350697Upstream
ABE-0010537arcBCDScomplement33506893353025Upstream
ABE-0010540yhcCCDScomplement33531213354050Upstream
ABE-0010545gltBCDSforward33547253359185Matches
ABE-0010547gltDCDSforward33591983360616Downstream
ABE-0285593repeat_regionforward33606883360786Downstream
ABE-0010549gltFCDSforward33611763361940Downstream
ABE-0010552yhcACDSforward33621123362786Downstream
ABE-0010554yhcDCDSforward33628073365188Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.