Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010575 (nanE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010575 showshow history
Names
nanE JW3192 ECK3212 yhcJ b3223
Product
putative N-acetylmannosamine-6-phosphate 2-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3370347 3371036 690 230
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007260 (IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase) Apr 2008
Automated Process Approved IPR011060 (IPR011060 Ribulose-phosphate binding barrel) Apr 2008
Automated Process Approved PF04131 (PF04131 Putative N-acetylmannosamine-6-phosphate epimerase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0046349 amino sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006051 N-acetylmannosamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0047465 N-acylglucosamine-6-phosphate 2-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nanE Experimental - PubMed ID: 9864311
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK3212 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3192 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yhcJ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b3223 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative N-acetylmannosamine-6-phosphate 2-epimerase Published Annotation - EcoCyc Accession Number: G7677
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name putative ManNAc-6P epimerase, NAD(P)-linked Published Annotation - Database Name: GenProtEC Jan 2006
Person Uncurated alternate product name ManNAc epimerase Experimental - PubMed ID: 9864311
Reference: Escherichia coli 		Jan 2006
Person Approved alternate product name predicted N-acetylmannosamine-6-P epimerase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Protein Sequence Similarity - PFAM Model Name: PF04131
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase Protein Sequence Similarity - InterPro Domain: IPR007260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011060 Ribulose-phosphate binding barrel Protein Sequence Similarity - InterPro Domain: IPR011060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 5.1.3.9 Published Annotation - Swiss-Prot Accession Number: P0A761 Feb 2006
Person Uncurated MultiFun 1.7.12 (metabolism; central intermediary metabolism; amino sugar conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12816 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A761 Published Annotation - Swiss-Prot Accession Number: P0A761 Jan 2006
Automated Process Approved db xref GeneID:947745 Published Annotation - Entrez Gene Database ID: 947745
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A761 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789617 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010575 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0046349 - amino sugar biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76255.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006051 N-acetylmannosamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0046349 amino sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011060
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0047465 N-acylglucosamine-6-phosphate 2-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007260
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005433 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001412 nanE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002101 nanE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0005310 nanE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001788 nanE CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0000684 nanE CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000529 nanE_1 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002219 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008476 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003338 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007879 nanE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003281 nanE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000976 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005892 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008806 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008558 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080151 nanE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003697 nanE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004316 yhcJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008889 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009197 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003724 nanE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008137 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002277 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007880 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006395 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007927 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009732 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009376 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009841 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007185 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006164 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008523 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009313 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008645 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006414 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028251 nanE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009732 nanE2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008099 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003736 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003009 nanE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003295 nanE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003867 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003861 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003659 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003691 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177848 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003567 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003516 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134160 nanE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006068 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003662 yhcJ CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000295 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003673 nanE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001303 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007695 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004487 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003826 nanE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007948 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010351 nanE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009798 nanE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007113 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007994 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006913 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008427 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006380 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007091 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007957 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005109 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003238 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003204 nanE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004178 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008118 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009040 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007601 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007272 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0107472 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083505 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004034 nanE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100356 nanE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005891 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005972 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008587 CDS
Person Approved Go view Shigella boydii 227 ADV-0003465 yhcJ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008969 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007303 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003863 yhcJ CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074676 yhcJ CDS
Person Approved Go view Shigella flexneri 301 ABT-0089496 yhcJ CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003456 yhcJ CDS
Person Approved Go view Shigella sonnei 046 ADD-0003672 nanE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001855 VC1781 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002485 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003539 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001456 nanE2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003127 nanE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003569 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240701 nanE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006890 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002669 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006272 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000490 nanE CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125453 nanE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007630 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007092 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003338 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0004981 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005674 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031136 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008745 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001640 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002554 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005590 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005253 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002836 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003399 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001636 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21070mutantTn5 InsertionRequest the StrainABE-0010575nanEyhcJ::Tn5KAN-I-SceI at position 385 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3365347 to 3376036
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010556yhcE_1CDSpforward33651853365664Downstream
ABE-0285102yhcEpseudogeneforward33651853365555(Interval #1) Downstream
ABE-0010557is_elementforward33655563366750Downstream
ABE-0285594mobile_elementcomplement33655563366750Downstream
ABE-0010559insH10CDScomplement33657023366682Downstream
ABE-0285070yhcE_2CDSpforward33666813366929Downstream
ABE-0285102yhcEpseudogeneforward33667553366929(Interval #2) Downstream
ABE-0010564yhcFCDSforward33669263367642Downstream
ABE-0010567yhcGCDSforward33678273368954Downstream
ABE-0010569nanQCDScomplement33690143369478Downstream
ABE-0010571nanKCDScomplement33694753370350Overlaps Downstream
ABE-0010575nanECDScomplement33703473371036Matches
ABE-0010577nanTCDScomplement33710843372574Upstream
ABE-0010579nanACDScomplement33726833373576Upstream
ABE-0010584nanRCDScomplement33736983374489Upstream
ABE-0010589dcuDCDSforward33748693376236Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.