Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010653 (yhdE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010653 showshow history
Names
yhdE maf JW3217 ECK3236 b3248
Product
nucleoside triphosphate pyrophosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3397785 3398378 594 198
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001208
EnteroFam0010653: Trusted threshold=474.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003697 (IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein) Apr 2008
Automated Process Approved IPR029001 (IPR029001 Inosine triphosphate pyrophosphatase-like) Jul 2018
Automated Process Approved PF02545 (PF02545 Maf-like protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0047429 nucleoside-triphosphate diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003697
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name yhdE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3236 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym maf Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3217 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3248 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product nucleoside triphosphate pyrophosphatase Published Annotation - EcoCyc Accession Number: EG11298
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Approved alternate product name conserved protein Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name conserved hypothetical protein Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name Maf-like protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0010653: Trusted threshold=474.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001208
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein Protein Sequence Similarity - InterPro Domain: IPR003697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02545 Maf-like protein Protein Sequence Similarity - PFAM Model Name: PF02545
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029001 Inosine triphosphate pyrophosphatase-like Protein Sequence Similarity - InterPro Domain: IPR029001
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.19 Published Annotation - Database Name: EC2GO: GO:0047429
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11298 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789646 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947753 Published Annotation - Entrez Gene Database ID: 947753
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P25536 Published Annotation - Swiss-Prot Accession Number: P25536 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P25536 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010653 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76280.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0047429 nucleoside-triphosphate diphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003697
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001208 yhdE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001193 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000884 yhdE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001041 yhdE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000985 yhdE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000674 yhdE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001940 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003916 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003928 maf CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000032 maf CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000505 yhdE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000096 yhdE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008976 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015656 yhdE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000279 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004381 maf CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306038 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000370 yhdE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000320 yhdE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002191 maf1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008452 maf1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003363 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007855 maf CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003304 maf CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000952 maf CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005862 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008830 maf1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008534 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080176 yhdE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003722 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004341 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008865 maf1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009221 maf1 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003749 yhdE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008162 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002302 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007904 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006419 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007951 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010257 maf1 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009400 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010207 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007209 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006189 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008548 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009338 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008671 maf1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006438 maf1 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028275 yhdE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009062 yhdE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008124 maf1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003759 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003031 yhdE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003319 yhdE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003895 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003833 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003633 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003716 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177871 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003592 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003541 maf1 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134184 yhdE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006093 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003687 yhdE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000037 maf CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000097 maf CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003703 maf CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001960 maf CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008738 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002705 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003037 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002847 yhdE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001145 CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000490 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011312 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000346 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288562 yhdE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006580 yhdE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060488 yhdE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000169 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001282 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000036 yhdE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004751 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146088 maf CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004543 maf-2 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007729 maf CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004461 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003862 yhdE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007982 maf CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010464 yhdE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009901 yhdE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007079 maf CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008028 maf CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008617 maf CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008393 maf CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008225 maf CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007125 maf CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007991 maf CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005075 maf CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003271 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003237 yhdE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004216 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008152 maf CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008033 maf CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007634 maf CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008548 maf CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112507 yhdE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085006 yhdE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004071 maf_2 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100452 yhdE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005857 maf CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008865 maf CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008055 maf CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001440 maf CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267738 maf CDS
Person Approved Go view Shigella boydii 227 ADV-0003438 yhdE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008693 maf1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007816 maf1 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003889 yhdE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074705 yhdE CDS
Person Approved Go view Shigella flexneri 301 ABT-0089523 yhdE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003483 yhdE CDS
Person Approved Go view Shigella sonnei 046 ADD-0003698 yhdE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000457 VC0418 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001330 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000915 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010914 yhdE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002781 yhdE_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001428 yhdE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002283 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243589 yhdE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005303 maf2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004391 yhdE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008295 maf2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003794 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127634 yhdE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007738 maf2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007918 maf2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003817 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006697 maf2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006784 maf2 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029786 yhdE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006392 maf2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004211 yhdE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000319 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008307 maf2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004340 maf2 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003674 yhdE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004470 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000542 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006107 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002833 maf CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3392785 to 3403378
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0174102yhdPCDScomplement33924583396258Downstream
ABE-0010651rngCDScomplement33963263397795Overlaps Downstream
ABE-0010653yhdECDScomplement33977853398378Matches
ABE-0010656mreDCDScomplement33983873398875Upstream
ABE-0010658mreCCDScomplement33988753399978Upstream
ABE-0010661mreBCDScomplement34000443401087Upstream
ABE-0010663csrDCDScomplement34013923403332Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.