Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010695 (panF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010695 showshow history
Names
panF JW3226 ECK3245 b3258
Product
pantothenate:sodium symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3407607 3409058 1452 484
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001216
EnteroFam0010695: Trusted threshold=1250.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001734 (IPR001734 Sodium/solute symporter) Apr 2008
Automated Process Approved IPR011849 (IPR011849 Sodium/pantothenate symporter) Apr 2008
Automated Process Approved PF00474 (PF00474 Sodium:solute symporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0036376 sodium ion export across plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011849
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0015937 coenzyme A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0015887 pantothenate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0031402 sodium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015081 sodium ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015233 pantothenate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name panF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3226 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3245 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3258 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product pantothenate:sodium symporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name sodium/pantothenate symporter Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name sodium:pantothenate symporter (SSS family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010695: Trusted threshold=1250.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001216
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00474 Sodium:solute symporter family Protein Sequence Similarity - PFAM Model Name: PF00474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011849 Sodium/pantothenate symporter Protein Sequence Similarity - InterPro Domain: IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001734 Sodium/solute symporter Protein Sequence Similarity - InterPro Domain: IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 1.5.3.5 (metabolism; building block biosynthesis; cofactor, small molecule carrier; Coenzyme A) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.138 (transport; substrate; Na+/pantothenate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.21 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Solute:Sodium Symporter (SSS) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010695 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P16256 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947752 Published Annotation - Entrez Gene Database ID: 947752
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG10685 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87082237 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P16256 Published Annotation - Swiss-Prot Accession Number: P16256 Jan 2005
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note sodium/pantothenate symporter; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0015937 - coenzyme A biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76290.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0015887 pantothenate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0036376 sodium ion export across plasma membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011849
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0015937 coenzyme A biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0031402 sodium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001734
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0015233 pantothenate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015081 sodium ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001216 panF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001183 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001800 panF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001425 panF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001133 panF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001475 panF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001927 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003902 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003940 panF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000020 panF CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000492 panF CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000107 panF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0008991 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017043 panF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000267 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004369 panF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306083 panF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000358 panF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000308 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002180 panF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003383 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007844 panF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003322 panF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000932 panF CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005850 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009700 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080197 panF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003732 panF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004361 panF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010313 panF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003758 panF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008174 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001037 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007915 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006430 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010331 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010683 panF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009411 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010851 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008559 panF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006449 panF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028286 panF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009042 panF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008137 panF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003778 panF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003039 panF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003328 panF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003907 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003821 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003621 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003736 panF CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177891 panF CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003604 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003551 panF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134194 panF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006107 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003709 panF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000025 panF CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000083 panF CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003714 panF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001972 panF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0008753 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002716 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003025 panF CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002858 panF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001134 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003674 panF CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000479 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011323 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000357 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288550 panF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006592 panF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0060477 panF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000172 panF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002370 panF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000014 panF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004734 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0146119 panF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007740 panF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004449 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003873 panF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007993 panF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010504 panF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009940 panF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007068 panF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008039 panF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008785 panF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008382 panF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008236 panF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007136 panF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008002 panF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005064 panF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003282 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003248 panF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004230 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008163 panF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008022 panF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007645 panF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008559 panF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0112528 panF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085017 panF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004085 panF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100489 panF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005846 panF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008854 panF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008066 panF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001423 panF CDS
Person Approved Go view Shigella boydii 227 ADV-0003556 panF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009059 panF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003901 panF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074715 panF CDS
Person Approved Go view Shigella flexneri 301 ABT-0089533 panF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003492 panF CDS
Person Approved Go view Shigella sonnei 046 ADD-0003708 panF CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001349 panF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000927 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010949 panF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002793 panF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001440 panF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002295 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243622 panF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005317 panF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004377 panF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008281 panF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003806 panF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127583 panF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007724 panF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007904 panF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002861 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006683 panF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006770 panF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029800 panF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006378 panF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004225 panF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000305 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008294 panF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004328 panF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003686 panF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004486 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000526 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006058 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002845 panF CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21087mutantTn5 InsertionRequest the StrainABE-0010695panFpanF::Tn5KAN-I-SceI at position 1277 in Plus orientation ,+ pKD460Blattner Laboratory
FB21088mutantTn5 InsertionRequest the StrainABE-0010695panFpanF::Tn5KAN-I-SceI at position 1277 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3402607 to 3414058
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010663csrDCDScomplement34013923403332Upstream
ABE-0010667yhdHCDSforward34034843404458Upstream
ABE-0285242yrdFpseudogeneforward34044953404637Upstream
ABE-0285243yrdEpseudogeneforward34046383405031Upstream
ABE-0010675accBCDSforward34054363405906Upstream
ABE-0010677accCCDSforward34059173407266Upstream
ABE-0010690yhdTCDSforward34073753407617Overlaps Upstream
ABE-0010695panFCDSforward34076073409058Matches
ABE-0010697prmACDSforward34090703409951Downstream
ABE-0010700dusBCDSforward34102803411245Downstream
ABE-0010703fisCDSforward34112713411567Downstream
ABE-0010706yhdJCDSforward34116533412537Downstream
ABE-0010710yhdUCDSforward34126213412800Downstream
ABE-0010712envRCDScomplement34128033413465Downstream
ABE-0010722acrECDSforward34138643415021Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.