Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010763 (aroE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010763 showshow history
Names
aroE JW3242 ECK3268 b3281
Product
shikimate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3430020 3430838 819 273
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001221
EnteroFam0010763: Trusted threshold=639.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011342 (IPR011342 Shikimate dehydrogenase) Apr 2008
Automated Process Approved IPR013708 (IPR013708 Shikimate dehydrogenase substrate binding, N-terminal) Apr 2008
Automated Process Approved IPR006151 (IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF01488 (PF01488 Shikimate / quinate 5-dehydrogenase) Jul 2018
Automated Process Approved PF08501 (PF08501 Shikimate dehydrogenase substrate binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0019632 shikimate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013708, IPR011342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name aroE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3268 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3242 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3281 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product shikimate dehydrogenase Published Annotation - EcoCyc Accession Number: EG10077
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name dehydroshikimate reductase, NAD(P)-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name dehydroshikimate reductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010763: Trusted threshold=639.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001221
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF08501 Shikimate dehydrogenase substrate binding domain Protein Sequence Similarity - PFAM Model Name: PF08501
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01488 Shikimate / quinate 5-dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF01488
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Protein Sequence Similarity - InterPro Domain: IPR006151
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013708 Shikimate dehydrogenase substrate binding, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013708
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011342 Shikimate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR011342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.1.1.25 Published Annotation - Swiss-Prot Accession Number: P15770 Feb 2006
Automated Process Uncurated EC number 1.1.1.282 Published Annotation - Database Name: EC2GO: GO:0004764
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.20 (metabolism; building block biosynthesis; amino acids; chorismate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10077 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010763 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789675 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P15770 Published Annotation - Swiss-Prot Accession Number: P15770 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P15770 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947776 Published Annotation - Entrez Gene Database ID: 947776
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Amino acid biosynthesis: Chorismate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note dehydroshikimate reductase; GO_process: GO:0009423 - chorismate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76306.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013708, IPR011342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0019632 shikimate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011342
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011342
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001221 aroE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000275 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000259 aroE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000316 aroE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002220 aroE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001134 aroE CDS
Ortholog
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129763 aroE CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105163 aroE CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104608 aroE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003954 aroE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004564 aroE CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000469 aroE CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000969 aroE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004797 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016936 aroE CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003799 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004354 aroE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306132 aroE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003571 aroE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003232 aroE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002118 aroE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009391 aroE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003407 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007819 aroE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003337 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000916 aroE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005823 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010156 aroE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009874 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080218 aroE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003758 aroE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004419 aroE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010349 aroE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010518 aroE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003780 aroE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008198 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003668 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007943 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006457 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010360 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010389 aroE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009438 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010428 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007251 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010419 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008588 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010613 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006475 aroE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028311 aroE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009796 aroE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008162 aroE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003853 aroE CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003055 aroE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004089 aroE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003929 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003945 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003762 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003758 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177908 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003627 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003574 aroE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134219 aroE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004613 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003735 aroE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003327 aroE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003729 aroE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001990 aroE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004857 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002727 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000233 aroE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002873 aroE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001122 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003690 aroE CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000462 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011333 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000368 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288686 aroE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006609 aroE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064319 aroE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002323 aroE CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001043 aroE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001510 aroE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009030 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147498 aroE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000170 aroE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007764 aroE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004423 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003909 aroE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008017 aroE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010559 aroE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012379 aroE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009020 aroE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008063 aroE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008797 aroE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008560 aroE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008691 aroE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007160 aroE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008025 aroE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009237 aroE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003301 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003267 aroE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004260 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008186 aroE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009209 aroE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007667 aroE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008906 aroE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114302 aroE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085829 aroE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004110 aroE_2 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100531 aroE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005822 aroE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009362 aroE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009213 aroE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001335 aroE CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263574 aroE CDS
Person Approved Go view Shigella boydii 227 ADV-0003579 aroE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009084 aroE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008047 aroE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003926 aroE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074740 aroE CDS
Person Approved Go view Shigella flexneri 301 ABT-0089550 aroE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003512 aroE CDS
Person Approved Go view Shigella sonnei 046 ADD-0003733 aroE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000057 VC0056 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000018 aroE CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000549 aroE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002427 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011175 aroE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001012 aroE_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002002 aroE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001068 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234746 aroE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004728 aroE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003861 aroE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007294 aroE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003059 aroE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116128 aroE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006843 aroE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008178 aroE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001973 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005533 aroE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006904 aroE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033825 aroE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004889 aroE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004590 aroE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000192 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004555 aroE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007912 aroE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003778 aroE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004589 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000375 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002909 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001401 aroE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3425020 to 3435838
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010746rrlDrRNAcomplement34238803426783Downstream
ABE-0010748alaUtRNAcomplement34269583427033Downstream
ABE-0010750ileUtRNAcomplement34270763427152Downstream
ABE-0010753rrsDrRNAcomplement34272213428762Downstream
ABE-0010759yrdACDSforward34292363429790Downstream
ABE-0010761yrdBCDScomplement34297663430023Overlaps Downstream
ABE-0010763aroECDScomplement34300203430838Matches
ABE-0010766tsaCCDScomplement34308433431415Upstream
ABE-0010768yrdDCDScomplement34314203431962Upstream
ABE-0010770smgCDScomplement34319913432464Upstream
ABE-0174103smfCDScomplement34324363433560Upstream
ABE-0010779defCDSforward34336903434199Upstream
ABE-0010781fmtCDSforward34342143435161Upstream
ABE-0010785rsmBCDSforward34352073436496Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.