Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010781 (fmt) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010781 showshow history
Names
fmt yhdD JW3249 ECK3274 b3288
Product
10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3434214 3435161 948 316
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001224
EnteroFam0010781: Trusted threshold=840.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002376 (IPR002376 Formyl transferase, N-terminal) Apr 2008
Automated Process Approved IPR011034 (IPR011034 Formyl transferase-like, C-terminal domain superfamily) Apr 2008
Automated Process Approved IPR015518 (IPR015518 (DEPRECATED) Methionine tRNA Formyltransferase-like) Apr 2008
Automated Process Approved IPR001555 (IPR001555 Phosphoribosylglycinamide formyltransferase, active site) Apr 2008
Automated Process Approved IPR005794 (IPR005794 Methionyl-tRNA formyltransferase) Apr 2008
Automated Process Approved IPR005793 (IPR005793 Formyl transferase, C-terminal) Apr 2008
Automated Process Approved IPR036477 (IPR036477 Formyl transferase, N-terminal domain superfamily) Jul 2018
Automated Process Approved PF02911 (PF02911 Formyl transferase, C-terminal domain) Jul 2018
Automated Process Approved PF00551 (PF00551 Formyl transferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005794
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009451 RNA modification Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011034
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004479 methionyl-tRNA formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name fmt Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3249 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yhdD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3274 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3288 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet)N-formyltransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0010781: Trusted threshold=840.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001224
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002376 Formyl transferase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00551 Formyl transferase Protein Sequence Similarity - PFAM Model Name: PF00551
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036477 Formyl transferase, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036477
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02911 Formyl transferase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02911
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR005793 Formyl transferase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005794 Methionyl-tRNA formyltransferase Protein Sequence Similarity - InterPro Domain: IPR005794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015518 (DEPRECATED) Methionine tRNA Formyltransferase-like Protein Sequence Similarity - InterPro Domain: IPR015518
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001555 Phosphoribosylglycinamide formyltransferase, active site Protein Sequence Similarity - InterPro Domain: IPR001555
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011034 Formyl transferase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011034
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.1.2.9 Published Annotation - Swiss-Prot Accession Number: P23882 Feb 2006
Automated Process Uncurated EC number 2.1.2.- Published Annotation - Database Name: EC2GO: GO:0016742
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 2.2.3 (information transfer; RNA related; RNA modification) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789683 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947779 Published Annotation - Entrez Gene Database ID: 947779
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P23882 Published Annotation - Swiss-Prot Accession Number: P23882 Jan 2005
Automated Process Approved db xref EcoGene:EG11268 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P23882 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010781 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009451 - RNA modification Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76313.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005794
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009451 RNA modification Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004479 methionyl-tRNA formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011034
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001224 fmt CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000279 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000201 fmt CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000269 fmt CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001176 fmt CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001212 fmt CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002597 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000679 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129767 fmt CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105166 fmt CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104612 fmt CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003960 fmt CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004558 fmt CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000463 fmt_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000963 fmt_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004791 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016929 fmt CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003805 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004348 fmt CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306148 fmt CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003577 fmt CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003238 fmt CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002113 fmt CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009397 fmt CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003413 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007813 fmt CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003343 fmt CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000910 fmt CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005817 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010162 fmt CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009868 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080224 fmt CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003764 fmt CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004425 fmt CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010344 fmt CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010512 fmt CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003786 fmt CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008204 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003674 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007949 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006463 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010366 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010383 fmt CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009444 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010422 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007257 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010425 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008594 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010545 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010436 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006481 fmt CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028317 fmt CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009791 fmt CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008168 fmt CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003847 fmt CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003060 fmt CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004083 fmt CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003935 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003939 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003768 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003764 fmt CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177914 fmt CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003633 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003580 fmt CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134225 fmt CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004607 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003741 fmt CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003333 fmt CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000338 fmt CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003735 fmt CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001995 fmt CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004851 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002733 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000239 fmt CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001116 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003696 fmt CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000456 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011339 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000374 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288756 fmt CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006615 fmt CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064324 fmt CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002326 fmt CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002205 fmt CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001516 fmt CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009036 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147509 fmt CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000179 fmt CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007770 fmt CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004417 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003915 fmt CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008023 fmt CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010576 fmt CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012362 fmt CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009014 fmt CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008069 fmt CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008803 fmt CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008554 fmt CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008697 fmt CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007166 fmt CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008031 fmt CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009231 fmt CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003307 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003273 fmt CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004266 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008192 fmt CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009215 fmt CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007673 fmt CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008900 fmt CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114287 fmt CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085823 fmt CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004116 fmt CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100549 fmt CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005816 fmt CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009356 fmt CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009219 fmt CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001329 fmt CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263565 fmt CDS
Person Approved Go view Shigella boydii 227 ADV-0003585 fmt CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009090 fmt CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008042 fmt CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003932 fmt CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074746 fmt CDS
Person Approved Go view Shigella flexneri 301 ABT-0089556 fmt CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003517 fmt CDS
Person Approved Go view Shigella sonnei 046 ADD-0003739 fmt CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000046 VC0045 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000015 fmt CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000541 fmt CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002433 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011191 fmt CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001018 fmt CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001996 fmt CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001062 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234739 fmt CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004720 fmt CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003867 fmt CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007300 fmt CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003065 fmt CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116115 fmt CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006849 fmt CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008184 fmt CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001969 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005527 fmt CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006898 fmt CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033819 fmt CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004895 fmt CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004596 fmt CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000186 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004549 fmt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007918 fmt CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003784 fmt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004595 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000369 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002931 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001395 fmt CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3429214 to 3440161
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010759yrdACDSforward34292363429790Upstream
ABE-0010761yrdBCDScomplement34297663430023Upstream
ABE-0010763aroECDScomplement34300203430838Upstream
ABE-0010766tsaCCDScomplement34308433431415Upstream
ABE-0010768yrdDCDScomplement34314203431962Upstream
ABE-0010770smgCDScomplement34319913432464Upstream
ABE-0174103smfCDScomplement34324363433560Upstream
ABE-0010779defCDSforward34336903434199Upstream
ABE-0010781fmtCDSforward34342143435161Matches
ABE-0010785rsmBCDSforward34352073436496Downstream
ABE-0010787trkACDSforward34365183437894Downstream
ABE-0010790mscLCDSforward34380243438434Downstream
ABE-0285071arfACDScomplement34384313438649Downstream
ABE-0010793zntRCDScomplement34387053439130Downstream
ABE-0010795yhdNCDScomplement34391413439509Downstream
ABE-0010799rplQCDScomplement34396163439999Downstream
ABE-0010802rpoACDScomplement34400403441029Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.