Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010787 (trkA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010787 showshow history
Names
trkA sapG JW3251 ECK3276 b3290
Product
NAD-binding component of TrK potassium transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3436518 3437894 1377 459
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001226
EnteroFam0010787: Trusted threshold=1321.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006036 (IPR006036 Potassium uptake protein TrkA) Apr 2008
Automated Process Approved IPR003148 (IPR003148 Regulator of K+ conductance, N-terminal) Apr 2008
Automated Process Approved IPR006037 (IPR006037 Regulator of K+ conductance, C-terminal) Apr 2008
Automated Process Approved IPR036721 (IPR036721 Regulator of K+ conductance, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF02254 (PF02254 TrkA-N domain) Jul 2018
Automated Process Approved PF02080 (PF02080 TrkA-C domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006036
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006036
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name trkA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3276 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym sapG Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3251 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3290 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product NAD-binding component of TrK potassium transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name potassium transport protein, NAD(P)-binding (Trk family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name transport of potassium Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010787: Trusted threshold=1321.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001226
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006036 Potassium uptake protein TrkA Protein Sequence Similarity - InterPro Domain: IPR006036
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003148 Regulator of K+ conductance, N-terminal Protein Sequence Similarity - InterPro Domain: IPR003148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02254 TrkA-N domain Protein Sequence Similarity - PFAM Model Name: PF02254
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02080 TrkA-C domain Protein Sequence Similarity - PFAM Model Name: PF02080
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006037 Regulator of K+ conductance, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006037
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036721 Regulator of K+ conductance, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036721
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.S.96 (transport; substrate; K+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.38 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The K+ Transporter (Trk) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGI8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789685 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGI8 Published Annotation - Swiss-Prot Accession Number: P0AGI8 Jan 2006
Automated Process Approved db xref ASAP:ABE-0010787 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947788 Published Annotation - Entrez Gene Database ID: 947788
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG11019 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note transport of potassium; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76315.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006036
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006036
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001226 trkA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000281 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000782 trkA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000736 trkA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000613 trkA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001191 trkA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002595 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000681 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003962 trkA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004556 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000461 trkA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000961 trkA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004789 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0016927 trkA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003807 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004346 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306155 trkA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003579 trkA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003240 trkA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002111 trkA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009399 trkA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003415 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007811 trkA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003345 trkA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000908 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005815 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010164 trkA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009865 trkA pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080226 trkA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003766 trkA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004427 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010342 trkA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010510 trkA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003788 trkA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008206 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003676 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007951 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006465 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010368 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010381 trkA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009446 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010420 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007259 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010427 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008596 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010547 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010438 trkA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006483 trkA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028319 trkA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009789 trkA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008170 trkA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003845 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004081 trkA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003937 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003937 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003770 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003766 trkA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177916 trkA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003635 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003582 trkA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134227 trkA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004605 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003743 trkA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003335 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000340 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003737 trkA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001997 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004849 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002735 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000241 trkA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002881 trkA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001114 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003698 trkA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0000454 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011341 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000376 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0288758 trkA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006617 trkA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064326 trkA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002351 trkA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002207 trkA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001518 trkA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009038 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0147511 trkA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000181 trkA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007772 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004415 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003917 trkA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008025 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010584 trkA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012353 trkA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009012 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008071 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008805 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008699 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007168 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008033 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009229 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003309 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003275 trkA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004268 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008194 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009217 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007675 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008898 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114278 trkA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085821 trkA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004118 trkA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100553 trkA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005814 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009354 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009221 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001327 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263563 trkA CDS
Person Approved Go view Shigella boydii 227 ADV-0003587 trkA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009092 trkA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008040 trkA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003934 trkA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074748 trkA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089558 trkA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003519 trkA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003741 trkA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000044 VC0043 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000014 trkA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000536 trkA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002435 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011199 trkA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001020 trkA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001994 trkA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001060 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234737 trkA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004718 trkA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003869 trkA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007302 trkA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003067 trkA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116106 trkA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006851 trkA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008186 trkA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001967 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005525 trkA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006896 trkA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033817 trkA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004897 trkA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004598 trkA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000184 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004547 trkA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007920 trkA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003786 trkA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004597 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000367 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0002946 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001393 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21104mutantTn5 InsertionRequest the StrainABE-0010787trkAtrkA::Tn5KAN-I-SceI at position 1082 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3431518 to 3442894
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010768yrdDCDScomplement34314203431962Upstream
ABE-0010770smgCDScomplement34319913432464Upstream
ABE-0174103smfCDScomplement34324363433560Upstream
ABE-0010779defCDSforward34336903434199Upstream
ABE-0010781fmtCDSforward34342143435161Upstream
ABE-0010785rsmBCDSforward34352073436496Upstream
ABE-0010787trkACDSforward34365183437894Matches
ABE-0010790mscLCDSforward34380243438434Downstream
ABE-0285071arfACDScomplement34384313438649Downstream
ABE-0010793zntRCDScomplement34387053439130Downstream
ABE-0010795yhdNCDScomplement34391413439509Downstream
ABE-0010799rplQCDScomplement34396163439999Downstream
ABE-0010802rpoACDScomplement34400403441029Downstream
ABE-0010805rpsDCDScomplement34410553441675Downstream
ABE-0010807rpsKCDScomplement34417093442098Downstream
ABE-0010809rpsMCDScomplement34421153442471Downstream
ABE-0010812rpmJCDScomplement34426183442734Downstream
ABE-0010814secYCDScomplement34427663444097Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.