Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010949 (kefB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010949 showshow history
Names
kefB JW3313 ECK3338 trkB b3350
Product
potassium:proton antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3478802 3480607 1806 602
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003148 (IPR003148 Regulator of K+ conductance, N-terminal) Apr 2008
Automated Process Approved IPR004771 (IPR004771 K+/H+ exchanger) Apr 2008
Automated Process Approved IPR006036 (IPR006036 Potassium uptake protein TrkA) Apr 2008
Automated Process Approved IPR006153 (IPR006153 Cation/H+ exchanger) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF02254 (PF02254 TrkA-N domain) Jul 2018
Automated Process Approved PF00999 (PF00999 Sodium/hydrogen exchanger family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006153
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006885 regulation of pH GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015299 solute:proton antiporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015386 potassium:proton antiporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kefB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym trkB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3338 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3313 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3350 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product potassium:proton antiporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name K+ efflux; NEM-activable K+/H+ antiporter Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name potassium:proton antiporter (CPA2 family) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family PF00999 Sodium/hydrogen exchanger family Protein Sequence Similarity - PFAM Model Name: PF00999
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003148 Regulator of K+ conductance, N-terminal Protein Sequence Similarity - InterPro Domain: IPR003148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02254 TrkA-N domain Protein Sequence Similarity - PFAM Model Name: PF02254
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006153 Cation/H+ exchanger Protein Sequence Similarity - InterPro Domain: IPR006153
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006036 Potassium uptake protein TrkA Protein Sequence Similarity - InterPro Domain: IPR006036
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004771 K+/H+ exchanger Protein Sequence Similarity - InterPro Domain: IPR004771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.37 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Monovalent Cation:Proton Antiporter-2 (CPA2) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.97 (transport; substrate; K+/H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG20110 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010949 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789749 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P45522 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947858 Published Annotation - Entrez Gene Database ID: 947858
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P45522 Published Annotation - Swiss-Prot Accession Number: P45522 Jan 2005
Person Approved function transport; Transport of small molecules: Cations Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note K+ efflux; NEM-activable K+/H+ antiporter; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0015386 - potassium:hydrogen antiporter activity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76375.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006813 potassium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003148
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006153
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006885 regulation of pH GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0015299 solute:proton antiporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006153
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015386 potassium:proton antiporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004771
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000084 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001982 kefB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001739 kefB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001520 kefB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000264 kefB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004007 kefB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004507 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000413 kefB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000911 kefB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004736 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015474 kefB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003862 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004300 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306310 kefB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003625 kefB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003287 kefB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002062 kefB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008832 kefB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007746 kefB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003402 kefB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000847 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005744 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006365 kefB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008788 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080301 kefB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003830 kefB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004478 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005404 kefB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003837 kefB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008254 kefB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004613 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028368 kefB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008235 kefB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003918 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003118 kefB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004019 kefB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003988 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003977 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003959 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003839 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177980 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003683 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003629 kefB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134273 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002543 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003862 kefB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003378 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000389 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003784 kefB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002043 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004786 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002783 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000290 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002930 kefB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001069 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003747 kefB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000407 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011388 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000424 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288806 kefB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006666 kefB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064381 kefB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003509 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001088 kefB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001498 kefB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009094 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002399 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007821 kefB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004361 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003964 kefB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008074 kefB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010749 kefB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005421 kefB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008120 kefB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005469 kefB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006321 kefB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006974 kefB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007217 kefB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008082 kefB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006770 kefB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003356 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003322 kefB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004319 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008242 kefB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004752 kefB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007722 kefB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004527 kefB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114145 kefB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085774 kefB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004167 kefB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100694 kefB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005766 kefB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005190 kefB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008605 kefB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001283 CDS
Person Approved Go view Shigella boydii 227 ADV-0003637 kefB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009144 kefB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075708 kefB pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0089606 kefB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003568 kefB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003794 kefB CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0003193 kefB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002705 VC2606 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007805 kefB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002481 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011352 kefB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001065 kefB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001948 kefB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001015 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234657 kefB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007810 kefB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003918 kefB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007347 kefB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003114 kefB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115948 kefB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006895 kefB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008231 kefB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001583 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009462 kefB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006850 kefB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033768 kefB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004943 kefB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004646 kefB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000136 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004441 kefB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007966 kefB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003832 kefB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004645 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000317 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003853 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001331 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3473802 to 3485607
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010917rpsGCDScomplement34735423474081Downstream
ABE-0010919rpsLCDScomplement34741783474552Downstream
ABE-0010922tusBCDScomplement34746783474965Downstream
ABE-0010928tusCCDScomplement34749733475332Downstream
ABE-0010933tusDCDScomplement34753323475718Downstream
ABE-0010936yheOCDScomplement34757183476440Downstream
ABE-0010938fkpACDScomplement34766073477419Downstream
ABE-0010944slyXCDSforward34776403477858Downstream
ABE-0010946slyDCDScomplement34779073478497Downstream
ABE-0285072yheVCDScomplement34785923478792Downstream
ABE-0010949kefBCDScomplement34788023480607Matches
ABE-0010951kefGCDScomplement34806073481161Overlaps Upstream
ABE-0010955yheSCDSforward34812893483202Upstream
ABE-0010957yheTCDSforward34832023484224Upstream
ABE-0010959yheUCDSforward34842183484436Upstream
ABE-0010962prkBCDSforward34844903485359Upstream
ABE-0285596repeat_regionforward34853723485393Upstream
ABE-0010964yhfACDScomplement34854143485818Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.