Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010976 (argD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010976 showshow history
Names
argD alaB dtu dapC JW3322 Arg1 argG ECK3347 b3359
Product
N-acetylornithine aminotransferase/N-succinyldiaminopimelate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3488960 3490180 1221 407
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004636 (IPR004636 Acetylornithine/Succinylornithine transaminase family) Apr 2008
Automated Process Approved IPR005814 (IPR005814 Aminotransferase class-III) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR017652 (IPR017652 Acetyl/Succinylornithine transaminase family, bacteria) Jul 2018
Automated Process Approved PF00202 (PF00202 Aminotransferase class-III) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017652
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name argD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym argG Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym Arg1 Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK3347 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym alaB Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym dtu Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym dapC Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW3322 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3359 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product N-acetylornithine aminotransferase/N-succinyldiaminopimelate aminotransferase Published Annotation - EcoCyc Accession Number: EG10066
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name acetylornithine delta-aminotransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004636 Acetylornithine/Succinylornithine transaminase family Protein Sequence Similarity - InterPro Domain: IPR004636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005814 Aminotransferase class-III Protein Sequence Similarity - InterPro Domain: IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017652 Acetyl/Succinylornithine transaminase family, bacteria Protein Sequence Similarity - InterPro Domain: IPR017652
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00202 Aminotransferase class-III Protein Sequence Similarity - PFAM Model Name: PF00202
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.6.1.11 Published Annotation - Swiss-Prot Accession Number: P18335 Feb 2006
Person Approved EC number 2.6.1.17 Published Annotation - Swiss-Prot Accession Number: P18335 Feb 2006
Automated Process Uncurated EC number 2.6.1.- Published Annotation - Database Name: EC2GO: GO:0008483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.5.1.3 (metabolism; building block biosynthesis; amino acids; arginine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.1.7 (metabolism; building block biosynthesis; amino acids; lysine, diaminopimelate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10066 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P18335 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947864 Published Annotation - Entrez Gene Database ID: 947864
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789759 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P18335 Published Annotation - Swiss-Prot Accession Number: P18335 Jan 2005
Automated Process Approved db xref ASAP:ABE-0010976 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Arginine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note acetylornithine delta-aminotransferase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006526 - arginine biosynthetic process; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76384.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006526 arginine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017652
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009089 lysine biosynthetic process via diaminopimelate Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000053 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000779 argD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001022 argD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000027 astC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000025 astC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002539 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003885 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129804 argD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104649 argD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004017 argD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004497 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000403 argD CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000899 argD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004720 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015484 argD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003871 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004280 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306362 argD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003641 argD CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003301 argD CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0002053 argD CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0008823 argD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003488 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0007737 argD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003412 argD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000838 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005734 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0006374 argD CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0008797 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080310 argD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003839 argD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004487 CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0007129 argD CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0005395 argD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003846 argD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008263 argD CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0004622 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0008009 argD CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0006522 argD CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0006068 argD CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0009932 argD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009503 argD CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0005440 argD CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0007318 argD CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0005101 argD CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0005170 argD CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0005013 argD CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0004894 argD CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0005496 argD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028377 argD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006580 argD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008244 argD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003908 argD CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0003127 argD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004010 argD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003999 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003988 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003948 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003848 argD CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177990 argD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003692 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003638 argD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134282 argD CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0002552 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003871 argD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003406 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000408 CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003793 argD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002062 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004777 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002798 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000305 argD CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002945 argD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001053 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003762 argD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000392 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011402 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000439 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289979 argD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006681 argD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064390 argD CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0002410 argD CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001091 argD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001506 argD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009104 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137667 argD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001866 argD-1 CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0007832 CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0004340 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003977 argD CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0008085 CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0010786 argD CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0012160 argD CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0005410 CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0008131 CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0005481 CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0006308 CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0006985 CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0007228 CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0008094 CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0006759 CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0003367 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003333 argD CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0004333 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0008253 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0004739 CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0007734 CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0004539 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114117 argD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085763 argD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004181 argD_2 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100727 argD CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0005754 CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0005179 CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0008617 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001268 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264172 argD CDS
Person Approved Go view Shigella boydii 227 ADV-0003650 argD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009154 argD CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0007510 argD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003989 argD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075699 argD CDS
Person Approved Go view Shigella flexneri 301 ABT-0089615 argD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003577 argD CDS
Person Approved Go view Shigella sonnei 046 ADD-0003803 argD CDS
Person Approved Go view Vibrio cholerae N16961 ADH-0002717 VC2618 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007780 argD CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001480 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0011408 argD CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001081 argD CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0001931 argD CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000998 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234620 argD CDS
Automated Process Approved Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007827 argD CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003939 CDS
Automated Process Approved Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007366 argD CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004481 argD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0256388 argD pseudogene
Automated Process Approved Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006915 argD CDS
Automated Process Approved Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008250 argD CDS
Automated Process Approved Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009443 argD CDS
Automated Process Approved Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006832 argD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033750 argD CDS
Automated Process Approved Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004961 argD CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004667 CDS
Person Uncurated Go view Yersinia pestis Pestoides A (biovar Pestoides) BBH-0002108 CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000116 CDS
Automated Process Approved Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004460 argD CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0007983 argD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003849 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis PB1/+ AFV-0004667 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis YPIII AFW-0000293 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003896 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001322 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0010976 argD lambda repressor assay Doodle - bnumber: b3359 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21129mutantTn5 InsertionRequest the StrainABE-0010976argDargD::Tn5KAN-I-SceI at position 429 in Plus orientation ,- pKD465Blattner Laboratory
FB21130mutantTn5 InsertionRequest the StrainABE-0010976argDargD::Tn5KAN-I-SceI at position 429 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3483960 to 3495180
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010957yheTCDSforward34832023484224Downstream
ABE-0010959yheUCDSforward34842183484436Downstream
ABE-0010962prkBCDSforward34844903485359Downstream
ABE-0285596repeat_regionforward34853723485393Downstream
ABE-0010964yhfACDScomplement34854143485818Downstream
ABE-0010970crpCDSforward34861203486752Downstream
ABE-0010974yhfKCDSforward34867913488893Downstream
ABE-0285597repeat_regionforward34889033488958Downstream
ABE-0010976argDCDScomplement34889603490180Matches
ABE-0010983pabACDScomplement34902663490829Upstream
ABE-0010987ficCDScomplement34908613491463Upstream
ABE-0010989yhfGCDScomplement34914533491620Upstream
ABE-0010992ppiACDScomplement34917253492297Upstream
ABE-0010997tsgACDSforward34925683493749Upstream
ABE-0285598repeat_regionforward34937583493783Upstream
ABE-0011003nirBCDSforward34940113496554Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.