Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0010983 (pabA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0010983 showshow history
Names
pabA JW3323 ECK3348 b3360
Product
aminodeoxychorismate synthase subunit 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3490266 3490829 564 188
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001271
EnteroFam0010983: Trusted threshold=510.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001317 (IPR001317 (DEPRECATED) Carbamoyl-phosphate synthase, GATase domain) Apr 2008
Automated Process Approved IPR011702 (IPR011702 (DEPRECATED) Glutamine amidotransferase superfamily) Apr 2008
Automated Process Approved IPR006220 (IPR006220 (DEPRECATED) Anthranilate synthase component II/delta crystallin) Apr 2008
Automated Process Approved IPR000991 (IPR000991 (DEPRECATED) Glutamine amidotransferase class-I, C-terminal) Apr 2008
Automated Process Approved IPR006221 (IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain) Apr 2008
Automated Process Approved IPR012998 (IPR012998 (DEPRECATED) Glutamine amidotransferase, class I, active site) Apr 2008
Automated Process Approved IPR001680 (IPR001680 WD40 repeat) Apr 2008
Automated Process Approved IPR017926 (IPR017926 Glutamine amidotransferase) Jul 2018
Automated Process Approved IPR029062 (IPR029062 Class I glutamine amidotransferase-like) Jul 2018
Automated Process Approved PF00117 (PF00117 Glutamine amidotransferase class-I) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006541 glutamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004049 anthranilate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pabA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK3348 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3323 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3360 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product aminodeoxychorismate synthase subunit 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name p-aminobenzoate synthetase, component II Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name aminodeoxychorismate synthase subunit II, component of p-aminobenzoate synthase multienzyme complex Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0010983: Trusted threshold=510.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001271
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR011702 (DEPRECATED) Glutamine amidotransferase superfamily Protein Sequence Similarity - InterPro Domain: IPR011702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001317 (DEPRECATED) Carbamoyl-phosphate synthase, GATase domain Protein Sequence Similarity - InterPro Domain: IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001680 WD40 repeat Protein Sequence Similarity - InterPro Domain: IPR001680
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017926 Glutamine amidotransferase Protein Sequence Similarity - InterPro Domain: IPR017926
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain Protein Sequence Similarity - InterPro Domain: IPR006221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012998 (DEPRECATED) Glutamine amidotransferase, class I, active site Protein Sequence Similarity - InterPro Domain: IPR012998
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000991 (DEPRECATED) Glutamine amidotransferase class-I, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000991
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029062 Class I glutamine amidotransferase-like Protein Sequence Similarity - InterPro Domain: IPR029062
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006220 (DEPRECATED) Anthranilate synthase component II/delta crystallin Protein Sequence Similarity - InterPro Domain: IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00117 Glutamine amidotransferase class-I Protein Sequence Similarity - PFAM Model Name: PF00117
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.6.1.85 Published Annotation - Swiss-Prot Accession Number: P00903
Reference: Escherichia coli K-12 MG1655 		Aug 2008
Person Uncurated MultiFun 1.5.3.2 (metabolism; building block biosynthesis; cofactor, small molecule carrier; folic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment EC number changed from 6.3.5.8 to 2.6.1.85; as ATP is not hydrolysed during the reaction, the classification of the enzyme as a ligase was incorrect Published Annotation - Web Resource URL: http://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=6.3.5.8
Reference: Escherichia coli K-12 MG1655 		Aug 2008
Automated Process Approved db xref GeneID:947873 Published Annotation - Entrez Gene Database ID: 947873
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P00903 Published Annotation - Swiss-Prot Accession Number: P00903 Jan 2005
Automated Process Approved db xref GI:1789760 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00903 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0010983 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10682 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Folic acid Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note p-aminobenzoate synthetase, component II; GO_process: GO:0046656 - folic acid biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76385.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006541 glutamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0046656 folic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004049 anthranilate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001317
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011702
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001271 pabA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001177 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000684 pabA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000567 pabA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001062 pabA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000553 pabA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002538 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003886 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004018 pabA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004496 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000402 pabA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000898 pabA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004719 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015486 pabA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003872 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004279 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306366 pabA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003642 pabA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003302 pabA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002052 pabA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008822 pabA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003489 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007736 pabA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003413 pabA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000837 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005733 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006375 pabA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008798 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080311 pabA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003840 pabA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004488 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007130 pabA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005394 pabA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003847 pabA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008264 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004623 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008010 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006523 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006069 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009931 pabA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009504 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005439 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007319 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005102 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005171 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005014 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004895 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005497 pabA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028378 pabA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006579 pabA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008245 pabA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0003907 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003128 pabA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004009 pabA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004000 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003989 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003947 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003849 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177991 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003693 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003639 pabA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134283 pabA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002553 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003872 pabA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003407 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000410 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003794 pabA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002063 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004776 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002799 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000306 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002946 pabA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001052 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003763 pabA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000391 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011403 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000440 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289980 pabA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006682 pabA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064391 pabA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002411 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001092 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002425 pabA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009105 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137666 pabA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000596 trpG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007833 pabA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004339 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003978 pabA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008086 pabA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010789 pabA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012155 pabA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005409 pabA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008132 pabA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005482 pabA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006307 pabA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006986 pabA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007229 pabA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008095 pabA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006758 pabA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003368 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003334 pabA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004335 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008254 pabA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004737 pabA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007735 pabA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004540 pabA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114114 pabA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085762 pabA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004182 pabA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100732 pabA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005752 pabA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005178 pabA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008618 pabA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001267 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264168 pabA CDS
Person Approved Go view Shigella boydii 227 ADV-0003651 pabA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009155 pabA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007509 pabA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003990 pabA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075698 pabA CDS
Person Approved Go view Shigella flexneri 301 ABT-0089616 pabA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003578 pabA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003804 pabA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002718 VC2619 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000240 pabA CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007778 pabA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001481 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011411 pabA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001082 pabA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001930 pabA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000997 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234619 pabA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007828 pabA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003940 pabA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007367 pabA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003130 pabA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115868 pabA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006916 pabA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008251 pabA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009442 pabA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006831 pabA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033749 pabA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004962 pabA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004668 pabA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000115 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004461 pabA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007984 pabA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003850 pabA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004668 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000292 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003902 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001321 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3485266 to 3495829
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010962prkBCDSforward34844903485359Downstream
ABE-0285596repeat_regionforward34853723485393Downstream
ABE-0010964yhfACDScomplement34854143485818Downstream
ABE-0010970crpCDSforward34861203486752Downstream
ABE-0010974yhfKCDSforward34867913488893Downstream
ABE-0285597repeat_regionforward34889033488958Downstream
ABE-0010976argDCDScomplement34889603490180Downstream
ABE-0010983pabACDScomplement34902663490829Matches
ABE-0010987ficCDScomplement34908613491463Upstream
ABE-0010989yhfGCDScomplement34914533491620Upstream
ABE-0010992ppiACDScomplement34917253492297Upstream
ABE-0010997tsgACDSforward34925683493749Upstream
ABE-0285598repeat_regionforward34937583493783Upstream
ABE-0011003nirBCDSforward34940113496554Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.