Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011003 (nirB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011003 showshow history
Names
nirB JW3328 ECK3353 b3365
Product
nitrite reductase catalytic subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3494011 3496554 2544 848
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Apr 2008
Automated Process Approved IPR007419 (IPR007419 BFD-like [2Fe-2S]-binding domain) Apr 2008
Automated Process Approved IPR006066 (IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site) Apr 2008
Automated Process Approved IPR001327 (IPR001327 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain) Apr 2008
Automated Process Approved IPR005117 (IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain) Apr 2008
Automated Process Approved IPR001100 (IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I) Apr 2008
Automated Process Approved IPR006067 (IPR006067 Nitrite/sulphite reductase 4Fe-4S domain) Apr 2008
Automated Process Approved IPR012744 (IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB) Apr 2008
Automated Process Approved IPR023753 (IPR023753 FAD/NAD(P)-binding domain) Jul 2018
Automated Process Approved IPR036188 (IPR036188 FAD/NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR036136 (IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily) Jul 2018
Automated Process Approved PF07992 (PF07992 Pyridine nucleotide-disulphide oxidoreductase) Jul 2018
Automated Process Approved PF03460 (PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain) Jul 2018
Automated Process Approved PF01077 (PF01077 Nitrite and sulphite reductase 4Fe-4S domain) Jul 2018
Automated Process Approved PF04324 (PF04324 BFD-like [2Fe-2S] binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0042128 nitrate assimilation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023753, IPR005117, IPR006067, IPR012744, IPR036136
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008942 nitrite reductase [NAD(P)H] activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nirB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW3328 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3353 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3365 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product nitrite reductase catalytic subunit Published Annotation - EcoCyc Accession Number: EG10653
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name nitrite reductase, large subunit, nucleotide-binding Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name nitrite reductase, large subunit, NAD(P)H-binding Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name nitrite reductase (NAD(P)H) subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001327 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site Protein Sequence Similarity - InterPro Domain: IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR007419 BFD-like [2Fe-2S]-binding domain Protein Sequence Similarity - InterPro Domain: IPR007419
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Protein Sequence Similarity - PFAM Model Name: PF03460
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01077 Nitrite and sulphite reductase 4Fe-4S domain Protein Sequence Similarity - PFAM Model Name: PF01077
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023753 FAD/NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR023753
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036188 FAD/NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036188
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036136
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF07992 Pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF07992
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04324 BFD-like [2Fe-2S] binding domain Protein Sequence Similarity - PFAM Model Name: PF04324
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB Protein Sequence Similarity - InterPro Domain: IPR012744
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006067 Nitrite/sulphite reductase 4Fe-4S domain Protein Sequence Similarity - InterPro Domain: IPR006067
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain Protein Sequence Similarity - InterPro Domain: IPR005117
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Protein Sequence Similarity - InterPro Domain: IPR001100
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.7.1.4 Published Annotation - Swiss-Prot Accession Number: P08201 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011003 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08201 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08201 Published Annotation - Swiss-Prot Accession Number: P08201 Jan 2005
Automated Process Approved db xref EcoGene:EG10653 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789765 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947868 Published Annotation - Entrez Gene Database ID: 947868
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note nitrite reductase (NAD(P)H) subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76390.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0042128 nitrate assimilation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR023753, IPR005117, IPR006067, IPR012744, IPR036136
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0008942 nitrite reductase [NAD(P)H] activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012744
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001327
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000048 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000141 nirB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000104 nirB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000057 nirB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000159 nirB CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004492 nirB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000397 nirB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000893 nirB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002048 nirB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008817 nirB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003494 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007731 nirB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003417 nirB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000832 nirB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005726 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006382 nirB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008803 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080317 nirB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003846 nirB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004493 nirB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007138 nirB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005388 nirB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003852 nirB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008269 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004630 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008016 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006529 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006075 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009925 nirB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009510 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005433 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007325 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005108 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005177 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005019 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004901 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005503 nirB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028383 nirB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006575 nasD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008249 nirB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003133 nirB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004004 nirB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004005 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003994 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003942 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003854 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177995 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003698 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003644 nirB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134288 nirB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002559 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003878 nirB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003420 nirB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000418 nirB CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011409 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003313 nirB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007839 nirB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004332 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003983 nirB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008092 nirB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010807 nirB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012136 nirB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005403 nirB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008138 nirB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005488 nirB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006302 nirB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006991 nirB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007234 nirB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008100 nirB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006753 nirB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003373 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003339 nirB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004343 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008260 nirB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004731 nirB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007741 nirB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004546 nirB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114103 nirB CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085757 nirB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004189 nirB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100757 nirB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005747 nirB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005172 nirB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008622 nirB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001254 nirB CDS
Person Approved Go view Shigella boydii 227 ADV-0003656 nirB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009160 nirB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007504 nirB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003995 nirB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075693 nirB CDS
Person Approved Go view Shigella flexneri 301 ABT-0089621 nirB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003583 nirB CDS
Person Approved Go view Shigella sonnei 046 ADD-0003809 nirB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006993 nirB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001490 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011431 nirB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001092 nirB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001921 nirB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000988 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234592 nirB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003951 nirB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007377 nirB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003195 nirB CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115833 nirB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006927 nirB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008414 nirB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003377 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005382 nirB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006821 nirB CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033741 nirB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004974 nirB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004679 nirB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000103 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004473 nirB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007992 nirB CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003858 nirB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004681 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000280 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003926 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001314 nirB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21134mutantTn5 InsertionRequest the StrainABE-0011003nirBnirB::Tn5KAN-I-SceI at position 267 in Minus orientation ,- pKD460Blattner Laboratory
FB21135mutantTn5 InsertionRequest the StrainABE-0011003nirBnirB::Tn5KAN-I-SceI at position 267 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3489011 to 3501554
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010976argDCDScomplement34889603490180Upstream
ABE-0010983pabACDScomplement34902663490829Upstream
ABE-0010987ficCDScomplement34908613491463Upstream
ABE-0010989yhfGCDScomplement34914533491620Upstream
ABE-0010992ppiACDScomplement34917253492297Upstream
ABE-0010997tsgACDSforward34925683493749Upstream
ABE-0285598repeat_regionforward34937583493783Upstream
ABE-0011003nirBCDSforward34940113496554Matches
ABE-0011005nirDCDSforward34965513496877Overlaps Downstream
ABE-0011008nirCCDSforward34970033497809Downstream
ABE-0011010cysGCDSforward34978283499201Downstream
ABE-0011016yhfLCDSforward34994483499615Downstream
ABE-0011019frlACDSforward34999103501247Downstream
ABE-0011021frlBCDSforward35012683502290Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.