Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011010 (cysG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011010 showshow history
Names
cysG JW3331 ECK3356 b3368
Product
siroheme synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3497828 3499201 1374 458
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000878 (IPR000878 Tetrapyrrole methylase) Apr 2008
Automated Process Approved IPR003043 (IPR003043 Uroporphiryn-III C-methyltransferase, conserved site) Apr 2008
Automated Process Approved IPR012409 (IPR012409 Sirohaem synthase) Apr 2008
Automated Process Approved IPR014777 (IPR014777 Tetrapyrrole methylase, subdomain 1) Apr 2008
Automated Process Approved IPR014776 (IPR014776 Tetrapyrrole methylase, subdomain 2) Apr 2008
Automated Process Approved IPR006367 (IPR006367 Sirohaem synthase, N-terminal) Apr 2008
Automated Process Approved IPR006366 (IPR006366 Uroporphyrin-III C-methyltransferase) Apr 2008
Automated Process Approved IPR028281 (IPR028281 Siroheme synthase, central domain) Jul 2018
Automated Process Approved IPR019478 (IPR019478 Sirohaem synthase, dimerisation domain) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR035996 (IPR035996 Tetrapyrrole methylase superfamily) Jul 2018
Automated Process Approved PF14824 (PF14824 Sirohaem biosynthesis protein central) Jul 2018
Automated Process Approved PF13241 (PF13241 Putative NAD(P)-binding) Jul 2018
Automated Process Approved PF10414 (PF10414 Sirohaem synthase dimerisation region) Jul 2018
Automated Process Approved PF00590 (PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0019354 siroheme biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006367, IPR006366
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR019478, IPR006367
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009236 cobalamin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006779 porphyrin-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000878
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051266 sirohydrochlorin ferrochelatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043115 precorrin-2 dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004851 uroporphyrin-III C-methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000878
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cysG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK3356 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3331 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3368 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product siroheme synthase Experimental - PubMed ID: 8243665
Reference: Escherichia coli K-12 		Mar 2008
Person Approved alternate product name uroporphyrinogen-III C-methyltransferase/precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase Experimental - PubMed ID: 7945210
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name uroporphyrinogen III methylase; sirohaeme biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR035996 Tetrapyrrole methylase superfamily Protein Sequence Similarity - InterPro Domain: IPR035996
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR028281 Siroheme synthase, central domain Protein Sequence Similarity - InterPro Domain: IPR028281
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR019478 Sirohaem synthase, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR019478
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000878 Tetrapyrrole methylase Protein Sequence Similarity - InterPro Domain: IPR000878
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003043 Uroporphiryn-III C-methyltransferase, conserved site Protein Sequence Similarity - InterPro Domain: IPR003043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014777 Tetrapyrrole methylase, subdomain 1 Protein Sequence Similarity - InterPro Domain: IPR014777
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014776 Tetrapyrrole methylase, subdomain 2 Protein Sequence Similarity - InterPro Domain: IPR014776
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF14824 Sirohaem biosynthesis protein central Protein Sequence Similarity - PFAM Model Name: PF14824
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006366 Uroporphyrin-III C-methyltransferase Protein Sequence Similarity - InterPro Domain: IPR006366
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006367 Sirohaem synthase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR006367
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13241 Putative NAD(P)-binding Protein Sequence Similarity - PFAM Model Name: PF13241
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF10414 Sirohaem synthase dimerisation region Protein Sequence Similarity - PFAM Model Name: PF10414
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012409 Sirohaem synthase Protein Sequence Similarity - InterPro Domain: IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Protein Sequence Similarity - PFAM Model Name: PF00590
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 2.1.1.- Published Annotation - Database Name: EC2GO: GO:0008168
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.3.1.76 Published Annotation - Swiss-Prot Accession Number: P0AEA8 Feb 2006
Person Approved EC number 4.99.1.4 Published Annotation - Swiss-Prot Accession Number: P0AEA8 Feb 2006
Person Approved EC number 2.1.1.107 Published Annotation - Swiss-Prot Accession Number: P0AEA8 Feb 2006
Person Uncurated MultiFun 1.5.3.12 (metabolism; building block biosynthesis; cofactor, small molecule carrier; heme, porphyrine) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947880 Published Annotation - Entrez Gene Database ID: 947880
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AEA8 Published Annotation - Swiss-Prot Accession Number: P0AEA8 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEA8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011010 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789768 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10188 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note uroporphyrinogen III methylase; sirohaeme biosynthesis Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76393.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR019478, IPR006367
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0009236 cobalamin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000878
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0019354 siroheme biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006367, IPR006366
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006779 porphyrin-containing compound biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003043
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0051266 sirohydrochlorin ferrochelatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0043115 precorrin-2 dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004851 uroporphyrin-III C-methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012409
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000878
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002564 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000061 cysG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000047 cysG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001646 cysG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000110 cysG CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002527 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0000743 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129695 cysG CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004026 cysG CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004489 cysG CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000394 cysG_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000890 cysG_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0005364 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0014887 cysG1 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003397 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004272 cysG CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0304612 cysG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002802 cysG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002045 cysG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008814 cysG CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003497 cysG CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007728 cysG CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003420 cysG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000829 cysG CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005723 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006385 cysG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008806 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080320 cysG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003849 cysG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004496 cysG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007141 cysG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005385 cysG CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003855 cysG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008272 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004633 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008019 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006532 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006078 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009922 cysG CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009513 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005430 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007328 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005111 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005180 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005022 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004904 cysG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005506 cysG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028386 cysG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006572 cysG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008252 cysG CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004099 cysG CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0003136 cysG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0004001 cysG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004008 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003997 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003939 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003857 cysG CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0177998 cysG CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003701 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003647 cysG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134291 cysG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002562 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003881 cysG CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003422 cysG CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000421 cysG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003802 cysG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002072 cysG CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005359 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002807 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000314 cysG CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001625 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003145 cysG CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0001009 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011412 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006690 cysg3 CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064406 cysG2 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002416 cysG2 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002218 cysG2 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002442 cysG2 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009127 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0138385 cysG CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0003396 cysG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007842 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004328 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003988 cysG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008095 cysG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010821 cysG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012125 cysG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005399 cysG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008142 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005492 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006299 cysG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006995 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007238 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008104 cysG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006749 cysG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003376 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003342 cysG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004347 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008264 cysG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004727 cysG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007744 cysG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004549 cysG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114093 cysG CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085754 cysG CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004193 cysG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100766 cysG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005743 cysG CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005169 cysG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008626 cysG CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001251 cysG CDS
Person Approved Go view Shigella boydii 227 ADV-0003659 cysG CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009163 cysG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007501 cysG CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0003998 cysG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075690 cysG CDS
Person Approved Go view Shigella flexneri 301 ABT-0089624 cysG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003586 cysG CDS
Person Approved Go view Shigella sonnei 046 ADD-0003812 cysG CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0006896 cysG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001493 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011442 cysG2 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001095 cysG_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001918 cysG_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000985 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234580 cysG1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007842 cysG1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003954 cysG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007381 cysG1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003192 cysG CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115818 cysG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006932 cysG1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008410 cysG1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003381 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005386 cysG1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006817 cysG1 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033737 cysG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004978 cysG1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004683 cysG2 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000100 cysG1 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004477 cysG1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007995 cysG1 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003861 cysG2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004684 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000277 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003934 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001312 cysG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21136mutantTn5 InsertionRequest the StrainABE-0011010cysGcysG::Tn5KAN-I-SceI at position 744 in Plus orientation ,+ pKD460Blattner Laboratory
FB21137mutantTn5 InsertionRequest the StrainABE-0011010cysGcysG::Tn5KAN-I-SceI at position 744 in Plus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3492828 to 3504201
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0010997tsgACDSforward34925683493749Upstream
ABE-0285598repeat_regionforward34937583493783Upstream
ABE-0011003nirBCDSforward34940113496554Upstream
ABE-0011005nirDCDSforward34965513496877Upstream
ABE-0011008nirCCDSforward34970033497809Upstream
ABE-0011010cysGCDSforward34978283499201Matches
ABE-0011016yhfLCDSforward34994483499615Downstream
ABE-0011019frlACDSforward34999103501247Downstream
ABE-0011021frlBCDSforward35012683502290Downstream
ABE-0174114frlCCDSforward35023403503170Downstream
ABE-0011029frlDCDSforward35031673503952Downstream
ABE-0011031frlRCDSforward35040523504783Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.