Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011021 (frlB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011021 showshow history
Names
frlB yhfN JW5700 ECK3359 b3371
Product
fructoselysine-6-P-deglycase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3501268 3502290 1023 341
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001347 (IPR001347 Sugar isomerase (SIS)) Apr 2008
Automated Process Approved PF01380 (PF01380 SIS domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:1901135 carbohydrate derivative metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0097367 carbohydrate derivative binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name frlB Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3359 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yhfN Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW5700 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3371 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product fructoselysine-6-P-deglycase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative enzyme Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative transport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF01380 SIS domain Protein Sequence Similarity - PFAM Model Name: PF01380
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001347 Sugar isomerase (SIS) Protein Sequence Similarity - InterPro Domain: IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 3.5.-.- Published Annotation - Swiss-Prot Accession Number: P0AC00 Feb 2006
Person Uncurated MultiFun 4.9.B (transport; Transporters of Unknown Classification; Putative uncharacterized transport protein) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12909 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011021 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC00 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AC00 Published Annotation - Swiss-Prot Accession Number: P0AC00 Jan 2006
Automated Process Approved db xref GI:87082251 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947875 Published Annotation - Entrez Gene Database ID: 947875
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative transport protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76396.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:1901135 carbohydrate derivative metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0097367 carbohydrate derivative binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005529 (DEPRECATED) sugar binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001347
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004842 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003940 frlB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004349 frlB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008192 frlB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003510 frlB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008811 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007725 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005719 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006388 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008809 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003852 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004499 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007144 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005382 CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008275 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004636 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008023 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006536 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006082 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009918 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009517 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005426 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007332 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005115 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005184 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005025 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004909 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005510 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028389 frlB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008255 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003139 frlB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003998 frlB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003704 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134294 frlB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002565 CDS
Person Approved Go view Shigella boydii 227 ADV-0003671 yhfN CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075687 yhfN CDS
Person Approved Go view Shigella flexneri 301 ABT-0256119 yhfN CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003589 yhfN CDS
Person Approved Go view Shigella sonnei 046 ADD-0003817 frlB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21140mutantTn5 InsertionRequest the StrainABE-0011021frlByhfN::Tn5KAN-I-SceI at position 780 in Plus orientation ,- pKD465Blattner Laboratory
FB21141mutantTn5 InsertionRequest the StrainABE-0011021frlByhfN::Tn5KAN-I-SceI at position 780 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3496268 to 3507290
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011003nirBCDSforward34940113496554Upstream
ABE-0011005nirDCDSforward34965513496877Upstream
ABE-0011008nirCCDSforward34970033497809Upstream
ABE-0011010cysGCDSforward34978283499201Upstream
ABE-0011016yhfLCDSforward34994483499615Upstream
ABE-0011019frlACDSforward34999103501247Upstream
ABE-0011021frlBCDSforward35012683502290Matches
ABE-0174114frlCCDSforward35023403503170Downstream
ABE-0011029frlDCDSforward35031673503952Downstream
ABE-0011031frlRCDSforward35040523504783Downstream
ABE-0285599repeat_regionforward35047863504821Downstream
ABE-0011035yhfSCDScomplement35049353506020Downstream
ABE-0011037yhfTCDScomplement35060323507336Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.