Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011029 (frlD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011029 showshow history
Names
frlD yhfQ JW3337 ECK3361 b3374
Product
fructoselysine 6-kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3503167 3503952 786 262
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002173 (IPR002173 Carbohydrate/purine kinase, PfkB, conserved site) Apr 2008
Automated Process Approved IPR011611 (IPR011611 Carbohydrate kinase PfkB) Apr 2008
Automated Process Approved IPR029056 (IPR029056 Ribokinase-like) Jul 2018
Automated Process Approved PF00294 (PF00294 pfkB family carbohydrate kinase) Jul 2018
Automated Process Uncurated GH28 (GH28 Glycoside Hydrolase Family 28) Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name frlD Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym yhfQ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved synonym JW3337 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK3361 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3374 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product fructoselysine 6-kinase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name putative kinase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name putative sugar kinase Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Uncurated protein family GH28 Glycoside Hydrolase Family 28 Protein Sequence Similarity - CAZy Model Name: GH28
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002173 Carbohydrate/purine kinase, PfkB, conserved site Protein Sequence Similarity - InterPro Domain: IPR002173
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029056 Ribokinase-like Protein Sequence Similarity - InterPro Domain: IPR029056
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011611 Carbohydrate kinase PfkB Protein Sequence Similarity - InterPro Domain: IPR011611
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00294 pfkB family carbohydrate kinase Protein Sequence Similarity - PFAM Model Name: PF00294
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P45543 Feb 2006
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011029 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P45543 Published Annotation - Swiss-Prot Accession Number: P45543 Jan 2005
Automated Process Approved db xref GeneID:947886 Published Annotation - Entrez Gene Database ID: 947886
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789775 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P45543 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12912 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative kinase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76399.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005719 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003992 frlD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004093 frlD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007982 frlD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003761 frlD CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008809 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007723 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005717 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006390 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008811 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003854 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004501 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007146 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005380 CDS
Person Approved Go view Escherichia coli E24377A (ETEC) ADO-0008277 CDS
Person Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0285235 frlD pseudogene
Person Approved Go view Escherichia coli HS ADR-0008257 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0003140 frlD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003996 frlD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004003 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003933 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003706 CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134296 frlD pseudogene
Person Approved Go view Shigella boydii 227 ADV-0003673 yhfQ CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009170 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075684 yhfQ CDS
Person Approved Go view Shigella flexneri 301 ABT-0089628 yhfQ CDS
Person Approved Go view Shigella flexneri 8401 BAG-0003591 yhfQ CDS
Person Approved Go view Shigella sonnei 046 ADD-0003819 frlD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3498167 to 3508952
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011010cysGCDSforward34978283499201Upstream
ABE-0011016yhfLCDSforward34994483499615Upstream
ABE-0011019frlACDSforward34999103501247Upstream
ABE-0011021frlBCDSforward35012683502290Upstream
ABE-0174114frlCCDSforward35023403503170Overlaps Upstream
ABE-0011029frlDCDSforward35031673503952Matches
ABE-0011031frlRCDSforward35040523504783Downstream
ABE-0285599repeat_regionforward35047863504821Downstream
ABE-0011035yhfSCDScomplement35049353506020Downstream
ABE-0011037yhfTCDScomplement35060323507336Downstream
ABE-0011041yhfUCDScomplement35073483507701Downstream
ABE-0011044phpCDScomplement35077123508590Downstream
ABE-0011046yhfWCDScomplement35085873509813Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.