Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011056 (trpS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011056 showshow history
Names
trpS JW3347 ECK3371 b3384
Product
tryptophan-tRNA ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3512634 3513638 1005 335
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001273
EnteroFam0011056: Trusted threshold=980.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002306 (IPR002306 Tryptophan-tRNA ligase) Apr 2008
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR002305 (IPR002305 Aminoacyl-tRNA synthetase, class Ic) Apr 2008
Automated Process Approved PF00579 (PF00579 tRNA synthetases class I (W and Y)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006436 tryptophanyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002305, IPR002306
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004830 tryptophan-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name trpS Published Annotation - PubMed ID: 4914847
Reference: Escherichia coli K-12 		Feb 2007
Person Approved synonym ECK3371 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW3347 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3384 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product tryptophan-tRNA ligase Published Annotation in EcoGene - EG Number: EG11030
Reference: Escherichia coli K-12 		Feb 2007
Person Approved alternate product name tryptophanyl-tRNA synthetase Experimental - PubMed ID: 4332555
Reference: Escherichia coli B 		Feb 2007
Person Approved alternate product name tryptophan tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0011056: Trusted threshold=980.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001273
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00579 tRNA synthetases class I (W and Y) Protein Sequence Similarity - PFAM Model Name: PF00579
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002305 Aminoacyl-tRNA synthetase, class Ic Protein Sequence Similarity - InterPro Domain: IPR002305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002306 Tryptophan-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR002306
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 6.1.1.2 Published Annotation - Swiss-Prot Accession Number: P00954 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11030 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947894 Published Annotation - Entrez Gene Database ID: 947894
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P00954 Published Annotation - Swiss-Prot Accession Number: P00954 Jan 2005
Automated Process Approved db xref GI:1789786 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00954 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0011056 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note tryptophan tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76409.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006436 tryptophanyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002305, IPR002306
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004830 tryptophan-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001273 trpS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000763 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000162 trpS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000154 trpS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000462 trpS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000458 trpS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002521 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002261 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129806 trpS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105204 trpS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104651 trpS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004036 trpS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004480 trpS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000392 trpS CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0000880 trpS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004696 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020829 trpS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003906 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004270 trpS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306382 trpS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003652 trpS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003309 trpS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001180 trpS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008797 trpS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003507 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007712 trpS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003429 trpS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000819 trpS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005706 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006400 trpS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008227 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080330 trpS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003865 trpS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004511 trpS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007156 trpS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005370 trpS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003865 trpS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008287 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004641 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008028 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006541 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006087 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009913 trpS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009522 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005421 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007337 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005120 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005189 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005030 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004914 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005515 trpS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028394 trpS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006562 trpS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008268 trpS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004089 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003150 trpS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003986 trpS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004018 trpS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003922 trpS CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003867 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178009 pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0003716 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003657 trpS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134298 trpS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002571 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003891 trpS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003423 trpS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000423 trpS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003803 trpS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002074 trpS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004747 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002808 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000315 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002952 trpS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001044 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003769 trpS CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000385 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011413 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000446 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288532 trpS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006691 trpS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064412 trpS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002382 trpS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001096 trpS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002448 trpS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009134 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136954 trpS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004503 trpS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007847 trpS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004327 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003991 trpS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008098 trpS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010832 trpS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012117 trpS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005396 trpS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008145 trpS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005495 trpS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006296 trpS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006998 trpS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007241 trpS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008108 trpS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006746 trpS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003379 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003345 trpS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004351 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008267 trpS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004724 trpS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007747 trpS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004552 trpS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114088 trpS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085751 trpS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004199 trpS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100777 trpS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005740 trpS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005164 trpS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008630 trpS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001250 trpS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263845 trpS CDS
Person Approved Go view Shigella boydii 227 ADV-0003683 trpS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009180 trpS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007490 trpS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004179 trpS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075672 trpS CDS
Person Approved Go view Shigella flexneri 301 ABT-0089638 trpS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003601 trpS CDS
Person Approved Go view Shigella sonnei 046 ADD-0003829 trpS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002722 VC2623 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000110 trpS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000038 trpS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001494 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011447 trpS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001096 trpS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001917 trpS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000984 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234578 trpS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007844 trpS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003955 trpS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007383 trpS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003191 trpS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115814 trpS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006934 trpS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008409 trpS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003382 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005387 trpS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006815 trpS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033736 trpS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004979 trpS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004684 trpS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000099 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004479 trpS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007996 trpS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003862 trpS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004685 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000276 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003939 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001311 trpS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3507634 to 3518638
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011041yhfUCDScomplement35073483507701Downstream
ABE-0011044phpCDScomplement35077123508590Downstream
ABE-0011046yhfWCDScomplement35085873509813Downstream
ABE-0011048yhfXCDScomplement35098133510976Downstream
ABE-0011050yhfYCDScomplement35110603511422Downstream
ABE-0011052yhfZCDScomplement35114393512344Downstream
ABE-0285600repeat_regionforward35125113512600Downstream
ABE-0011056trpSCDScomplement35126343513638Matches
ABE-0011058gphCDScomplement35136313514389Overlaps Upstream
ABE-0011061rpeCDScomplement35143823515059Upstream
ABE-0011063damCDScomplement35150773515913Upstream
ABE-0011065damXCDScomplement35160203517306Upstream
ABE-0011067aroBCDScomplement35173983518486Upstream
ABE-0011069aroKCDScomplement35185433519064Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.