Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0011061 (rpe) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0011061 showshow history
Names
rpe yhfD dod JW3349 ECK3373 b3386
Product
D-ribulose-5-phosphate 3-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3514382 3515059 678 226
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001275
EnteroFam0011061: Trusted threshold=640.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR011060 (IPR011060 Ribulose-phosphate binding barrel) Apr 2008
Automated Process Approved IPR000056 (IPR000056 Ribulose-phosphate 3-epimerase-like) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved PF00834 (PF00834 Ribulose-phosphate 3 epimerase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009052 pentose-phosphate shunt, non-oxidative branch Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000056
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004750 ribulose-phosphate 3-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name rpe Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW3349 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yhfD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym dod Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK3373 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b3386 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Automated Process Approved product D-ribulose-5-phosphate 3-epimerase Experimental - PubMed ID: 7603433 Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0011061: Trusted threshold=640.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001275
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00834 Ribulose-phosphate 3 epimerase family Protein Sequence Similarity - PFAM Model Name: PF00834
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000056 Ribulose-phosphate 3-epimerase-like Protein Sequence Similarity - InterPro Domain: IPR000056
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011060 Ribulose-phosphate binding barrel Protein Sequence Similarity - InterPro Domain: IPR011060
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 5.1.3.- Published Annotation - Database Name: EC2GO: GO:0016857
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 5.1.3.1 Published Annotation - Swiss-Prot Accession Number: P0AG07 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.3 (metabolism; central intermediary metabolism; pentose phosphate shunt, non-oxidative branch) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1789788 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11960 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AG07 Published Annotation - Swiss-Prot Accession Number: P0AG07 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AG07 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947896 Published Annotation - Entrez Gene Database ID: 947896
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0011061 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Non-oxidative branch, pentose pathway Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009052 - pentose-phosphate shunt, non-oxidative branch Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC76411.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009052 pentose-phosphate shunt, non-oxidative branch Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000056
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004750 ribulose-phosphate 3-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000056
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001275 rpe CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000765 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000163 rpe CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000261 rpe CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000461 rpe CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000856 rpe CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002519 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002263 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129807 rpe CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0105205 rpe CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104652 rpe CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0004038 rpe CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0004478 rpe CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000390 rpe_1 CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0000878 rpe CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004694 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020826 rpe CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003908 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004268 rpe CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0306387 rpe CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0003654 rpe CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003311 rpe CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001182 rpe CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008795 rpe CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003509 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007710 rpe CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003431 rpe CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0000817 rpe CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005704 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006402 rpe CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008225 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080332 rpe CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003867 rpe CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0004513 rpe CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007158 rpe CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005368 rpe CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003867 rpe CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008290 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004643 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008030 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006543 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006089 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009911 rpe CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009524 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005419 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007339 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005122 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005191 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005032 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004916 rpe CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005517 rpe CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028396 rpe CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006560 rpe CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008270 rpe CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0004087 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003152 rpe CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003984 rpe CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0004020 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0004015 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003920 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0003869 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0178011 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003718 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003659 rpe CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0134300 rpe CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002573 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003893 rpe CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003425 rpe CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000425 rpe CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003805 rpe CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0002076 rpe CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004745 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002810 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0000317 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002954 rpe CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001042 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003771 rpe CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000383 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0011415 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000448 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0288530 rpe CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006693 rpe CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064414 rpe CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003518 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003180 rpe CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002450 rpe CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0009136 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0136958 rpe CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000569 rpe CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007849 rpe CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004325 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003993 rpe CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008100 rpe CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010837 rpe CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012111 rpe CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005394 rpe CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008147 rpe CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005497 rpe CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006294 rpe CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007000 rpe CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007243 rpe CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008110 rpe CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006744 rpe CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003381 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003347 rpe CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004353 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008269 rpe CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004722 rpe CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007749 rpe CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004554 rpe CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0114082 rpe CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085749 rpe CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004201 rpe CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100782 rpe CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005738 rpe CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005162 rpe CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008632 rpe CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001248 rpe CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263843 rpe CDS
Person Approved Go view Shigella boydii 227 ADV-0003685 rpe CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009182 rpe CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007488 rpe CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0004177 rpe CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0075670 rpe CDS
Person Approved Go view Shigella flexneri 301 ABT-0089640 rpe CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003603 rpe CDS
Person Approved Go view Shigella sonnei 046 ADD-0003831 rpe CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002724 VC2625 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000109 rpe CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0000041 rpe CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001496 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011452 rpe CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001098 rpe CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001915 rpe CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000982 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234576 rpe CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007846 rpe CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003957 rpe CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007385 rpe CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003189 rpe CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115808 rpe CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006936 rpe CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008407 rpe CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003384 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005389 rpe CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006813 rpe CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033734 rpe CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004981 rpe CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004686 rpe CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000097 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004481 rpe CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007998 rpe CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003864 rpe CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004687 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000274 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0003953 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0001309 rpe CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21146mutantTn5 InsertionRequest the StrainABE-0011061rperpe::Tn5KAN-I-SceI at position 386 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3509382 to 3520059
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0011046yhfWCDScomplement35085873509813Downstream
ABE-0011048yhfXCDScomplement35098133510976Downstream
ABE-0011050yhfYCDScomplement35110603511422Downstream
ABE-0011052yhfZCDScomplement35114393512344Downstream
ABE-0285600repeat_regionforward35125113512600Downstream
ABE-0011056trpSCDScomplement35126343513638Downstream
ABE-0011058gphCDScomplement35136313514389Overlaps Downstream
ABE-0011061rpeCDScomplement35143823515059Matches
ABE-0011063damCDScomplement35150773515913Upstream
ABE-0011065damXCDScomplement35160203517306Upstream
ABE-0011067aroBCDScomplement35173983518486Upstream
ABE-0011069aroKCDScomplement35185433519064Upstream
ABE-0011071hofQCDScomplement35194653520703Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.